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ATTGGAGGAGCCAGTGAGGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattattagcactggcagttgtatgcttagttctaattctatgttgttcaatcaaatttgatgtgttgtgctttgtgcag
species | Glycine max |
transcript | GLYMA10G33680.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAG GTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAAEST: gi|16277734|gb|BI942535.1|BI942535
genomic: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattatt ... ctttgtgcagGTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAA
EST: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAG GTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAAEST: gi|16284045|gb|BI945876.1|BI945876
genomic: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattatt ... ctttgtgcagGTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAA
EST: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAG GTGGGGGTGTAGCTCTTCTCTATGCATCAAGTGAGTTCGGATAA-CTTCAAEST: gi|16282089|gb|BI944831.1|BI944831
genomic: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattatt ... ctttgtgcagGTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTT-GGATAAGCTTCAA
EST: GGGCATAGTACCAG GTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAAEST: gi|17400780|gb|BM177562.1|BM177562
genomic: GGGCATAGTACCAGgtagattatt ... ctttgtgcagGTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAA
EST: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCTG GTGGTGGTGTTGCTCTTCTTTATGCATCGAGTGAGTTGGATAAGCTTCAAAEST: gi|15813269|gb|BI785544.1|BI785544
genomic: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattatt ... ctttgtgcagGTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAA
EST: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAG GTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAA
genomic: AGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattatt ... ctttgtgcagGTGGTGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGAGGAGCCAGTGAGGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattattagcactggcagttgtatgcttagttctaattctatgttgttcaatcaaatttgatgtgttgtgctttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG