Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGTATCTGTGGCTTCTGTTTGATTTGGCTGTGGGTCCTGACAATCTTGTGGAAAATGGGCCTTACAAgtgagtgagcttatgcatatttagcactgaaggtcatttactgcctgaactttatttacaacaaaattaaggtacttcttgttttacatttttctgtgaaacag

Basic information

species Glycine max
transcript GLYMA10G32320.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g56670.2 (Oryza sativa), 5'ss of exon 15
GTCAAGTATCTGTGGCTTCTGTTTGATTTGGCTGTGGGTCCTGACAATCTTGTGGAAAATGGGCCTTACAAgtgagtgagcttatgcatatttagcactgaaggtcatttactgcctgaactttatttacaacaaaattaaggtacttcttgttttacatttttctgtgaaacag
||||| ||||| |||||||| |||||||| ||||  || ||||| ||| |||| ||||||||||| || |||| |||  |     | | ||| |  |       |  |||| |  | ||    |  || |  |    |||  |||  ||    ||| ||                
GTCAAATATCTCTGGCTTCTTTTTGATTTAGCTGCAGGCCCTGATAATATTGTTGAAAATGGGCCATATAAgtaagtacgacgccgtagattcaataagttcaattgtttatt--cagacgcatccttcctgc----ttactgtaaatca-actttgcag---------------

upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 14
GTCAAGTATCTGTGGCTTCTGTTTGATTTGGCTGTGGGTCCTGACAATCTTGTGGAAAATGGGCCTTACAAgtgagtgagcttatgcatatttagcactgaaggtcatttactgcctgaactttatttacaacaaaattaaggtacttcttgttttacatttttctgtgaaacag
||||||||||| |||||||| |||||||| ||||  || ||||||||| |||| |||||||| || || |||| |||  |   |     ||  || |    || |||  |  |   | |    ||      |||     |  |||    | ||| | ||                
GTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAAgtaagtatgac-accagcatccagta----agttcaggtgtttattcagacatagagttcacagttacagtgtatcattggttctgcag---------------

upper sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 16
GTCAAGTATCTGTGGCTTCTGTTTGATTTGGCTGTGGGTCCTGACAATCTTGTGGAAAATGGGCCTTACAAgtgagtgagcttatgcatatttagcactgaaggtcatttactgcctgaactttatttacaacaaaattaaggtacttcttgtttta--catttttctgt-gaaacag-----------------------------------------------------------------------------
||||||||| |||||||||| ||||||||||||| |||| | ||||| ||||| ||||||||||| ||||||| |||      || | | |       |     || |||  |        |  ||| |  | |||   || |    | |    | |  ||| |  |  | |||| |                                                                              
GTCAAGTATTTGTGGCTTCTTTTTGATTTGGCTGCGGGTTCGGACAACCTTGTTGAAAATGGGCCATACAAgtaagtccatgcatacttgtacttttttctttttcttttttttttccccttcaattgattaaaaatccaaagcctatttgaactgaaacatctagcaattgaaataagatatcaatctcaattacaatagatggtaacagttacttgtttctatcatattctgttaaaaattctccctttacag