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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgttttgtagtttctgacatccttagccagtgtccattggtttctttgttattagaggttattttgtctttgttgcatcactgatattca...

Basic information

species Glycine max
transcript GLYMA10G30020.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 13
TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgttttgtagtttctgacatccttagccagtgtccattggtt-tctttgttattagaggttattttgtctttgttgcatcactgatattca--
|| || |  || || || |||   ||||   |||||||||| |||||||| |||||||||||||| || ||||| |||||  |||| ||  || | |  || |   | || |   |  |   || ||||  |  |  ||   |||  |      | | |    | |    |   || |    |||  
TTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGgtgagtcatct-tactgcaacctatgcctaacgcaa--agcgtcctcttttcatccaagtttgtgccacatgtctgaattctcaccctaaacaggacctcagc

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 12
TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgttttgta-----gtttctg------acatcctt------------agccagtgtcca--ttggtttctttgttatt--agaggtta-ttttgtctttgttgcatcactgatattca-----
||||| | ||| || ||||||  ||| |  || ||||| ||||||||||| || || ||||||||||| |||||||||||  ||||||| | | | |     |         |||      ||||||||            || |||| |  |   || |  ||     |||  | | |||  || ||      |    || || || |||      
TTCACAAGGTCAGGCCACACTCAACTCCCTAGTAATGCTATCATGATCACTAGTACAATCACTGTTGTTCTTTTCAGCACGATGgtaagttctctctcaaacaaacacaaccctgtgcaatacatccttcggttcaaagggagacagtatgaaagctgatccctgaacaattccacaagttggttctgataaaatcatctctcttatgttccctcag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 14
TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaag-atatt-tgttttgtagtttctgacatccttagccagtgtccattggtttctttgt-tattagaggttattttgtctttgttgcat-cactgatattca
||||||   || || || |||  | |||||| |||||| ||||||||||| |||||  ||| |||||| || ||||||||| ||||||| || |  || ||| |   |  |   ||| |       | |    || |      || ||||    |  || |  |  | | |   | ||||  |     
TTCACCGCATCTGGTCATACTGAATTGCGAATCAATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaaggatgtaatgctttctctctgttattatcttggatggttattttctgctcagcaggtgtatttctagcaatctgttgatagatttgtgcacttttg----

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G037342_T01 (Zea mays), 5'ss of exon 12
TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgtt---ttgtagtttctgacatccttagccagtgtccattggtttctttgttattagaggttattttgtctttgttgcatcactgatattca------------------------------------------------------------
||||| |  || || || |||  ||  |  |||||||| ||||||||||||||||| ||||  ||||| |||||||||||| | ||||| | ||| |     || ||   || |     |||  || | |  ||  ||    ||| | ||  ||  ||| |||        | | ||   |||   |                                                            
TTCACAAGATCAGGCCATACTCAACAACCTAGCAATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctttctcaaactgcagcacctaaaga--ttacacaatata-ataagtcatattgattttcaagcctatattgcagacaa-gtaccaaacataaaaacattcctttccctgctacaacatgggtctgactgagaacaattattctctgtttatgcag

upper sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 13
TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgttttgtagtttctgacatc-ctta-gccagtgtccattggtttcttt--gttattagaggttattttgtctttgttgcatcactgatattca
||  | | |||||| || |||  | |||||   |||||||||||||| || |||||||| || ||||| |||||||||||||||||||| | |      || |       | |   ||||  | ||  |    |||||||| |  |  ||||||     || | | |   |    |   ||| |||||
TTTGCAAGGTCGGGACATACTCAATTGCGATCAAATGCAATCATGATTACCAGCACCATAACAGTTGTTCTTTTCAGCACAGTGgtaagttctcctgcctgcatcacaaaatactgcttatactagactttggtggtttctcttgggcattagaaagatttatatttccatcattt---tga-attca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15288061|gb|BI471952.1|BI471952
EST:     ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG                         GTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
EST: gi|151398797|gb|EV268668.1|EV268668
EST:     ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG                         GTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
EST: gi|22541751|gb|BU091594.1|BU091594
EST:     ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG                         GTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTNTACTGCCCCATACT
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
EST: gi|12496314|gb|BG047002.1|BG047002
EST:     ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG                         GTGTTTGGGTCTG-TGACTAAGCCACTCATAAGGCTTTTACTGCCCCATAC
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTT-GGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATAC