1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TCGCTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGTGTGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgttgacttatttgaaacaaatctcaaatgatgccaaataggtttaagtccctccgctaatcactgtgtttcacttttaattcaccttgcag
species | Glycine max |
transcript | GLYMA10G02040.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG TCACTGATGCTCGTCACATCCTTAAACCCAEST: gi|254343540|gb|GR857296.1|GR857296
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG TCACTGATGCTCGTCACATCCTTAAACCCAEST: gi|58014928|gb|CX701670.1|CX701670
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG TCACTGATGCTCGTCACATCCTTAAACCCAEST: gi|209708984|gb|BW653498.1|BW653498
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG TCACTGATGCTCGTCACATCCTTAAACCCAEST: gi|193401454|gb|FK369277.1|FK369277
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG TCACTGATGCTCGTCACATCCTTAAACCCA
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGTGTGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgttgacttatttgaaacaaatctcaaatgatgccaaataggtttaagtccctccgctaatcactgtgtttcacttttaattcaccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA