1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGgtatcattctcctcacgttctttctaagtattttatttttgtttgattatccattagtaatgtaaaaaaaatcaatagtcattgacatgtaactatgattgttttaattttcacacag
species | Glycine max |
transcript | GLYMA09G25160.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG ATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCAGTTAGTTATAAEST: gi|58020188|gb|CX706930.1|CX706930
genomic: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGgtatcattct ... tttcacacagATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCAGTTAGTTATAA
EST: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG ATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCATTTAGTTATAAEST: gi|58023814|gb|CX710555.1|CX710555
genomic: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGgtatcattct ... tttcacacagATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCAGTTAGTTATAA
EST: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG ATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCATTTAGTTATAAEST: gi|21594281|gb|BQ610112.1|BQ610112
genomic: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGgtatcattct ... tttcacacagATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCAGTTAGTTATAA
EST: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG ATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCAGT
genomic: CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGgtatcattct ... tttcacacagATTAAAGGAATAATGAAGAAGGAAGTCGGAGAGCTTTTCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGgtatcattctcctcacgttctttctaagtattttatttttgtttgattatccattagtaatgtaaaaaaaatcaatagtcattgacatgtaactatgattgttttaattttcacacag
- - - - TTGAAG
- - - - - - - - - - - - - - - GCAAAG