1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCAAAGCTCTGAAGATGCTTCAAACAATAAAGATAAGGAAGAACAAGAAATTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGgtagggtgaacttaaaatttcactccagtggctatggagtactttgatttcggcatttgtacaatactgcatgaagtatttaaaagtggatttgttaaaa...
species | Glycine max |
transcript | GLYMA09G23250.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTACCCTGAGGCCTNTAAACATGGAAGACATGAGACAGGCCAAGAGTCAG GTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAGEST: gi|58021184|gb|CX707926.1|CX707926
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAG
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAG GTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAGEST: gi|18710705|gb|BM522513.1|BM522513
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAG
EST: ATGAGACAGGCCAAGAGTCAG GTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAGEST: gi|58021000|gb|CX707742.1|CX707742
genomic: ATGAGACAGGCCAAGAGTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAG
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAG GTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAGEST: gi|58014250|gb|CX700992.1|CX700992
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAG
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAG GTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAGEST: gi|9439963|gb|BE440475.1|BE440475
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAG
EST: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAG GTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAG
genomic: TTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGgtagggtgaa ... ttaaatgcagGTGGCTGCAAGTTTTGCGTCAGAAGGATCCGTAATGAATGAGTTGAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGCTCTGAAGATGCTTCAAACAATAAAGATAAGGAAGAACAAGAAATTACCCTGAGGCCTTTAAACATGGAAGACATGAGACAGGCCAAGAGTCAGgtagggtgaacttaaaatttcactccagtggctatggagtactttgatttcggcatttgtacaatactgcatgaagtatttaaaagtggatttgttaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA