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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaatcttcattatgcttcctgagtttgcgttttttttctttatctggacgtggctgatataaatgtttttaacttcattctgctggtttgttgggtgcttactaagctaatatgtggttgatgttaacaaaatttaatcag

Basic information

species Glycine max
transcript GLYMA08G37270.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 11
---CTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaatcttcattatgcttcctgagtttgcgttttttttctttatctggacgtggctgatataaatgtttttaacttcattctgctggtttgttgggtgcttactaagctaat-atgtggttgatgttaacaaaatttaatcag
   || || || |||||||||||||||||||| ||||  ||||| || || || || ||||||||||||||  | ||| ||||| ||||||  |  ||||  |  | | ||||    | | |  ||  ||  ||||    | ||     ||        | | ||  ||  ||     |  | ||||  || |  ||        | | |      | || || | |||  |        ||||||     
GCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGCTGC-AGCAG-

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 14
CTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaatcttcattatgcttcctgagttt-gcgttttttttctttatctggacgtggctgatata---aatgtttttaacttcattctgctggtttgttgggtgcttactaagctaatatgtggttgatgttaacaaaatttaatcag
|||||||||||||||||||||||| |||||||||| || |||||||| |  ||||| || || ||||   | || |||||||| ||||  || |  | ||||  | || |||  | |||  |||    | || | |         | ||||||  |    |   | ||   ||| | |||     ||  || |  | |||     | || |   |  |  | | || ||| |  |  ||  |   |     
CTTACTTCTAGAGGATTTGTTGAGAAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaattctatagtatatttctcttgcttagtgagccaagagtctatctgatcaccaccactttagcaaatatgtttg-tgacaacctccatgcttga-atttactaatacaagttttctatgtttggttcttgca--acccag----

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 14
CTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaatctt-cattatgcttcctgagttt-gcgttttttttctttatctggacgtggctgatata---aatgtttttaacttcattctgctggtttgttgggtgcttactaagctaatatgtggttgatgttaacaaaatttaatcag
||||||||||||||||||||||||||||||||||| || |||||||| |  ||||| || || ||||   | || |||||||| ||||  || |  | ||||  | ||||  |  | |||  |||    | || | |         | ||||||  |    |   | ||   ||| | |||             || ||   |       ||||| | |  |||||  ||| |  |  ||  |   |     
CTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGCTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaattctatagtatatttctcttgcttagtgagccaagagtctatctgatcaccaccactttagcaaatatgtttgtgacagcctccatgcttgaatttactaatactaggtttctatgt--ttggttcttgca--acccag----

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0211g00090.t01 (Vitis vinifera), 5'ss of exon 6
CTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaatctt-cattatgcttcctgagttt-gcgttttttttctttatctggacgtggctgatata---aatgtttttaacttcattctgctggtttgttgggtgcttactaagctaatatgtggttgatgttaacaaaatttaatcag
||||||||||||||||||||||| ||||||||||| || |||||||| |  ||||| |  || ||||   | || |||||||| ||||  || |  | ||||  | ||||  |  | |||  |||    | || | |         | ||||||  |    |   | ||   ||| | |||     ||  || |  | |||     | || |   |  |  | | || ||| |  |  ||  |   |     
CTTACTTCTAGAGGATTTGTTGAAGAGGATTTTGTTAAAGTAGCAGAATACTTTGACGTTGCTGTGACCGTGGCAGTGAAGATCAAGGCTGAAACTACAGgtcttaaaattctatagtatatttctcttgcttagtgagccaagagtctatctgatcaccaccactttagcaaatatgtttg-tgacaacctccatgcttga-atttactaatacaagttttctatgtttggttcttgca--acccag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715302|gb|BW654189.1|BW654189
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|213600939|gb|DB980362.1|DB980362
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATAGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|214009158|gb|DB988551.1|DB988551
EST:     GATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGCAGAGAGCAAAG                         GAACAAAGCTGAAGGACTACTTGGCCACAATTGAGTCAGGATCTACCTTTC
genomic: GATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209724909|gb|BW669598.1|BW669598
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|120496684|gb|EH224851.1|EH224851
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209716395|gb|BW650768.1|BW650768
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209710569|gb|BW676521.1|BW676521
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|9902305|gb|BE611273.1|BE611273
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|120532861|gb|EH260994.1|EH260994
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|214007919|gb|DB986480.1|DB986480
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|120492638|gb|EH220805.1|EH220805
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|6071890|gb|AW101277.1|AW101277
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|22541323|gb|BU091166.1|BU091166
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAAGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|213602914|gb|DB974079.1|DB974079
EST:     GATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTAAGTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: GATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|31470758|gb|CD412786.1|CD412786
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209708167|gb|BW673830.1|BW673830
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|11412137|gb|BF424157.1|BF424157
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|7326943|gb|AW620741.1|AW620741
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209718643|gb|BW662721.1|BW662721
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|214005553|gb|DB989381.1|DB989381
EST:     ATGCAGCAGTGAAGATAGCTGTGAAGATTAA-GGAGAGAGCAAAG                         GAACAAAGCTGAAGGAC-TCATGGGCCAGAATTGAGT-ATCTTTCTACCTT
genomic: ATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTC-TTGGCCACAATTGAGTCATC-TTCTACCTT
EST: gi|15203223|gb|BI425991.1|BI425991
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209721356|gb|BW654550.1|BW654550
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|7691708|gb|AW759831.1|AW759831
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209704315|gb|BW683547.1|BW683547
EST:     GATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: GATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|31561799|gb|CD487637.1|CD487637
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|31461256|gb|CD403284.1|CD403284
EST:     AAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: AAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209699628|gb|BW655720.1|BW655720
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|151400775|gb|EV270589.1|EV270589
EST:     GATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: GATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209709692|gb|BW668228.1|BW668228
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|20813386|gb|BQ297864.1|BQ297864
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|214005303|gb|DB985145.1|DB985145
EST:     GATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTGCTTGGCCACAGTTGAGTTGA-ATTCTACCTTT
genomic: GATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAG-TCATCTTCTACCTTT
EST: gi|151399265|gb|EV269136.1|EV269136
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|213593505|gb|DB977192.1|DB977192
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|12690400|gb|BG156736.1|BG156736
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|151406194|gb|EV276009.1|EV276009
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|120495586|gb|EH223753.1|EH223753
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|20812881|gb|BQ297359.1|BQ297359
EST:     CAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: CAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|31307474|gb|CD392677.1|CD392677
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209728366|gb|BW660004.1|BW660004
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209719838|gb|BW674990.1|BW674990
EST:     AAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: AAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209715020|gb|BW650871.1|BW650871
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209699198|gb|BW656187.1|BW656187
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209716860|gb|BW682262.1|BW682262
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
EST: gi|209700490|gb|BW660884.1|BW660884
EST:     TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAG                         GAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC
genomic: TTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaat ... atttaatcagGAACAAAGCTGAAGGACTTCTTGGCCACAATTGAGTCATCTTCTACCTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTACTTCTAGAGGATTTGTTGAGGAGGATTTTGTCAAGGTAGCAGAGTTTTTTGATGCAGCAGTGAAGATAGCTGTGAAGATTAAGGGAGAGAGCAAAGgttcttaaatcttcattatgcttcctgagtttgcgttttttttctttatctggacgtggctgatataaatgtttttaacttcattctgctggtttgttgggtgcttactaagctaatatgtggttgatgttaacaaaatttaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG