Sequence
atgc intronic sequence ATGC exonic sequenceGGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgtagtactgttactctgctcattggctattgaaatgccctcagtatagcttacattgctgatttacagtcaaaaaaaattatcttcaccttatccatttt...
Basic information
species | Glycine max |
transcript | GLYMA08G34030.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G34030.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g08360.1 (Oryza sativa), 5'ss of exon 15
GGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgtagtactgttactctgctcattggctattgaaatgccctcagtatagcttacattgctgatttacagtcaaaaa-aaattatcttcaccttatccatttt
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TGATGAATTTGAGGACATGCTACGTGCATTGACATTGGAGAGAAGTCAGATAAAGGAGGCTATGGGATTTGCATTGGATAATGCTGATGCAGCTGGAGAGgtaaatccttccttgcgctagatttgacttgatcagtcaatt-tctccctttctttctttatttttaaataaggatgtattatttcattcttgtttaggtt
upper sequence: GLYMA08G34030.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G174785_T02 (Zea mays), 5'ss of exon 14
GGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgtagtactgttactctgctcattggctattgaaatgccctcagtatagcttacattgctgatttacag--tcaaaaaaaattatcttcaccttatccatttt
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TGATGAATTTGAGGACATGCTGCGAGCTTTGACATTAGAGAGGAGCCAAATAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAGgtaatg-tgtaccttctaatattatgtaattagttctattttcttttattttctttattacttttttgcattgcttaatggtactgtgacttaattaggta-
upper sequence: GLYMA08G34030.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G25060.1 (Arabidopsis thaliana), 5'ss of exon 13
GGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgta------gtactg--ttactctgctcattggct---attgaaatgccctcagtatagcttacatt----gctgatttaca-gtcaaaaaaaattatcttcaccttatccatttt----------------------------
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GGATGAGTTCGAGGACATGTTGCGTGCTCTTACTTTAGAAAGGAGTCAGATAAAAGAAGCTATGGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAGAGgtacaatatgttctgacttatatatttcagtacatttagttggttttttctagacaccacaaaaaatttgaacagaactactcgttaataaaatagatattcatatgcctcttcctacttatatatgtgtacttaattccacag
upper sequence: GLYMA08G34030.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G10800.1 (Arabidopsis thaliana), 5'ss of exon 13
GGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgtagtactgttactctgctcattggctattgaaatgccctcagt---atagcttacattgct-gatttacagtcaaaaaaaattatctt-caccttatccatttt
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GGATGAATTTGAGGACATGTTGCGCGCTCTAACTTTAGAAAGGAGTCAAATCAGAGAAGCTATGGGGTTTGCTTTGGATAACGCAGAGGCAGCTGGTGAGgtaaaat--ttgttctgcc--ttggataac-atacaccctctgttgaatctctcagaaagctcaacatgtgttttgaattccctttcttataaaataatcatcca
upper sequence: GLYMA08G34030.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 13
GGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgtagtactgttactctgct-cattggctattgaaatgccctcagtatagcttacattgctgatt-tacagtcaaaaaaaattatctt-caccttatccatttt
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GGATGAATTTGAGGATATGTTGCGTGCTTTGACATTAGAAAGGAGTCAGATAAAGGAAGCTATGGGTTTTGCTTTAGATAATGCTGATGCAGCTGGAGAGgtaatgc-atgatgttgcagcatcttcttatatagtctttttaaaccacttgcctttacaaatggtgctgcagaggtcatggatatggtgcttaacccagc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208164117|gb|GD962385.1|GD962385EST: TAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAG ATAGTTGAAGTTTTGACAGAATCCTTGACACTTAAAGAAACCCCTATTCCA
genomic: TAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgtagtactgt ... ttaactgcagATAGTTGAAGTTTTGACAGAATCCTTGACACTTAAAGAAACCCCTATTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGATTTTCTTTAGATAATGCCGATGCTGCTGGCGAGgtagtactgttactctgctcattggctattgaaatgccctcagtatagcttacattgctgatttacagtcaaaaaaaattatcttcaccttatccatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa