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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaacttccaagaacttttggtgatcatgtagaaataaaatttaagtcaatttgattaatgttgcaattgttatcag

Basic information

species Glycine max
transcript GLYMA08G28890.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaact-tccaagaac-----ttttggtgatcatgta---gaaata--aaatttaagtcaatttgatt--aatg--ttgcaattgt-tatcag
|||||||||||| | || |||||||| ||||||||||| || |||||||| ||||| || || || || || |||   || |||  ||| ||| | | |  ||     ||||  || | |||||   || ||    |||||  ||  |    | |   |||   || | || | | ||||
GCAGAGAGTGCAATAGATCAAATGGATTGGATTGAAAAGATTACTGGTGTCATTGCATCTTTGCTTAGCTCACAATCCCCAGAACAGgtcactattcgatgacccagattttattgtttatgtatttgacatgttgaattttcgtttaccaaaatgtgatggtctgtacttctgtttcag

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaacttccaagaacttttg-gtgatcatgtaga-aataaaatttaagtcaatttgat--taatgttgcaattgttatcag
|||||||||||  |||| || ||||| |||||||||||||| |||||||| || ||||| || ||||| || |||   || ||| |||| | |    || ||||  | | | | |  || | |   | ||||   |  || |||   |||| ||    ||||| ||||
GCAGAGAGTGCGATGGATCAGATGGATTGGATTGAAAAAATAACTGGTGTCATCGCTTCTTTGCTGAGCTCCCAATCGCCCGAACGGgttagt---gagtacttaggtggggttagttacatagccagattttgatttatctgacactaatatt----ttgtt-tcag

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAA-AGGgtaacttccaagaacttttggtgatcatgtagaaataaaatttaagtcaatttgattaatgttgcaattgt-tatcag
|||||||||||| | || || ||||||||||||||||| || |||||||||||||| || |||||||| || |||   || ||| ||| ||       |   | | || |     || |   ||        | ||| |||     |  | ||  || | | ||||
GCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAGgttagtaatggatggcctctgtttggattgcatgtattctggaatattcagtttacaatacttggctgttctgtttcag

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaactt-ccaagaacttttggtgatcatgtagaaataaaatttaagtcaatttgattaatgttgcaattgttatcag
|||||||||||| |||| || ||||| |||||||||||||| || || || |||||||| || ||||| || ||   ||||||| | |||| |    ||  |   |||   || || || | ||  | ||| | | | | |||    |||     |||||  |||
GCAGAGAGTGCAATGGATCAGATGGATTGGATTGAAAAAATTACCGGCGTCATTGCTTCTTTGCTGAGCTCCCAGTCTCCTGAACGAgtaagtgattaatgaacattga--attatttacatatggactttgattta-tgtgacatctgtatt--ttgtttacag

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 5
GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAA-AGGgtaacttccaagaacttttggtgatcatgtagaaataaaatttaagtcaatttgattaatgttgcaattgt-tatcag
|||||||||||| | || || ||||| ||||||||||| || ||||||||||||||  | || ||||  || |||   || ||| ||| ||       |     | || |     || |    |        | ||| |||     |  | ||  || | | ||||
GCAGAGAGTGCAGTAGATCAGATGGATTGGATTGAAAAGATAACTGGTGTTATTGCCCCTTTGCTGAACTCACAATCCCCAGAACAGgttagtaatggatggtctctgtttggattgcatgtcttctggaatattcagtttacaatacttggctgttctgtttcag

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaacttccaagaa-----cttttggtgatcatgtagaaataaaatttaagt-caatttgattaatgttgcaattgtta----tcag
|| ||||||||||| || |||||||| ||||| ||||| |||||||| |||||||| ||| |||| ||||||||  | ||||||  ||||| |   |  |      ||||   ||| || |   | || ||||   | | ||| ||   | ||  | ||   | ||    ||||
GCTGAGAGTGCACTCGATCAAATGGATTGGATAGAAAAGATCACTGGGGTTATTGCATCACTACTTAGTTCTCAGGTCCCTGAACAGgtaagtattatcattattcctttacctgaccaggctcatattaaataccaatgcaactttggtgattgtccatcggctacatttcag

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 14
GCAGAGAGTGCACTGGACCAAATGGACTGGATTGAAAAAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaacttccaagaacttttg-gtgatcatgtagaaataaaatttaagtcaatttgattaatgttgcaattgt-tatcag
|||||||||||||||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||   |||||| ||||||| |       |  | ||  |||  || |||   |  | ||   |||| |||||| | |||  | ||| | | ||||
GCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTGAGTTCTCAGGCTCCTGAGAGGgtaattagtgcagatgtatgcatgactatttagcctttgatttgtggtcattttgatgactgtatccattatatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685866|gb|AW756514.1|AW756514
EST:     AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGG                         ATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAG
genomic: AAATCACTGGTGTTATTGCTTCATTACTGAGTTCTCAAATTCCTGAAAGGgtaacttcca ... ttgttatcagATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAG