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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTAAATAACACGCCATGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGGCAAgtatctttgtctcctaagccttcactatatttttcttttaacttttgtagtgttcacacagctactgatgctccaactcctattgtatatactcttgtgg...

Basic information

species Glycine max
transcript GLYMA08G24630.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24630.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 11
----GTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTAAATAACACGCCATGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGGCAAgtatctttgtctcctaagccttcact----atatttttcttttaacttttgtagtgttcacacagctactgatgctccaactcctattgtatatactcttgtgg
    ||||| ||||||||||||||||||||||| ||||||||||| || || || || ||||| ||||||||||||||||| ||||| |||||  | ||||  | || | || |     || |  |   |    |||  | | | ||   ||||| |  ||||  |    |  |       ||    ||  | |||||  |       
TGTGGTTGACTGTGGAAAAGCAAAAGAGACCACCTATGATGCTTTGAACAATACACCTTGTCTGCTACCTTCTTGGATATCTCAAGCTTCTGCGAGACAGgtgaata-cattatactaaaacctattgttgtaaatagatctttcttgtgttttgcatcgttcttatttttgatttcagaacattgactcctctatatgat-------

upper sequence: GLYMA08G24630.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ19043 (Selaginella moellendorffii), 5'ss of exon 11
----GTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTAAATAACACGCCATGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGGCAAgtatctttgtctcctaagccttcactatatttttcttttaacttttgtagtgttcacacagctactgatgctccaactcctattgtatatactcttgtgg
    || ||    || ||||| || |||||| |||| || ||||| |||||||| ||||||||||| ||| | ||||||||| |||||||| | || |||| |  ||   |||  ||      ||     |  |  || || |||||| |||  ||                                                
TGTGGTGGACGTGGGGAAAGCCAAGGAGACCTCTTACGACGCTTTGAATAACACACCATGTCTTCTTCCTACGTGGATATCAAAAGCATCTTCGCGGCAGgta--tactcttgcttct-----ctatggaaattcgttattctaacttctgtcttgcag---------------------------------------------

upper sequence: GLYMA08G24630.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 11
----GTTGATTGTGGAAAAGCAAAAGAGACCACTTATGATGCTTTAAATAACACGCCATGTCTTCTACCTTCTTGGATATCACAAGCATCTGCACGTCAGGCAAgtatctttgtctcctaagccttcactatatttttcttttaacttttgtagtgttcacacagctactgatgctccaactcctattgtatatactcttgtgg
    || ||    || ||||| || |||||  |||| || ||||| |||||||||||||||||||| ||| | ||||||||| |||| ||| | || |||| |    ||||  |   ||| |      |  |||| |   ||    | ||| ||                                                  
TGTGGTGGACGTGGGGAAAGCCAAGGAGACGTCTTACGACGCTTTGAATAACACGCCATGTCTTCTTCCTACGTGGATATCAAAAGCGTCTTCGCGGCAGgtatac-tcttgcttctctatggaaatgcgttattctaacttctg-tcttgcag--------------------------------------------------