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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag

Basic information

species Glycine max
transcript GLYMA08G22140.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 5
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggatt-ctaaatact-tgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag
|| || || ||||| ||||| |||||||||||||| ||||| ||||| || |||||||| ||  | ||||||||||| ||  || ||  ||  | |   |  | || || |    |||    | |   |||   | |          |   |||   ||                                                                     
AATCTCTATTGGGCCGATAGTGGTGATTTAGTGACAATTGCAAGTGACACCTCATTCTACATTTTGAAGTACAATgtaagtttttctgcattttgttggctctgtagttcaatgatgtaacatctacttgatgtaactataacacaacaattataccttccag-----------------------------------------------------------------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag
||||| || |||||||||||||||||  ||||  | || || ||||||||||||||||| || || |||||||| || ||                   | || | |||       | | | || || |       || |||  || | |   | | |  ||   ||||  |    |     |||| | ||      ||| |   || ||| ||   ||  | |||
AACCTTTATTGGGCTGATAGCGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATACTGAAGTACAACgtaag------------------ttattgtattat-----ctaaatgttcattatgttatttcttttctcctcttgaatgtgttattgcgtgaaagttctttt---tttacca-tggcatgaagttatgtttgtaatttgtgttcctacag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag
||| | |||||||||||||| |||||  ||||  | || || ||||||||||||||||| ||||| ||||||||||| || ||  |  ||  |  |     | ||| |   ||||||  ||||||      |  || | | |    |     ||| |     |||||| |||   |||   |||  |||                                     
AACGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaag-atattgtatcgtcaaa----tgattattatcttgttt-ctttttccttttacccaccttgtgatgcatggcgttataaacaaaatgactatgatatg-tgctttttag-------------------------------------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag
||  | |||||||||||||| |||||  ||||  | || || ||||||||||||||||| ||||| ||||||||||| || ||  |  || ||  |    || ||| |  | ||  |   |  || |         |      || || | || |  |||  |    || |    | |  | ||    |||     |||                           
AATGTTTACTGGGCTGATAGTGGTGACCTAGTTGCAATAGCAAGTGATACATCATTCTACATCCTCAAGTACAATgtaag-atattgtatcctcaaatgatt-attatctagtttctttttccttctt--------ttacccacctccttgtgatgatggggattataacacaaaacgagattt----gtgctttgcag---------------------------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctat---gtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaa---acattttaacttccattgttgcag
|| || ||||||||||| || ||||||||||| || ||||| |||||||| |||||||| ||  | || || ||||||||   | | | |   | |      ||| ||      |||||| ||| |   | |  ||   ||||    ||| |    | |    ||||    | ||    |  |   |   | ||||    | |||   | |  ||  |||  ||  ||| ||
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcactgtcttaattgcctatgtt----cagttgacctttcagttacatccactattttttgtcctttttaatgtcaaattaagaagaaattatttttctggtcaaattgaaatgtattaatacaaaagtttccttttatc-ttgtag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaa---tgaatatctgatggcacttactagtgaagcac-agtaaacattttaacttccattgttgcag
|| || ||||||||||| || ||||||||||| || ||||| |||||||| |||||||| ||  | || || ||||||||   | | | ||| | |    ||   | |   |  || ||| |||     | |  ||  | |||    | | | | |    ||||      |  || |  |       | | |  | | || |  | | |  ||  |||  ||  ||| ||
AATCTTTACTGGGCTGACAGTGGTGATTTAGTAACAATTGCAAGTGATACGTCATTCTACATTTTGAAATATAATgtgagttctgtcattaccttattaattgcctatgttca-gtcgacctttctgttacatccactgatttgtgtcttttatgtcaaattaagaagcaatcattttttctggtcaaatggacatgtactaacacaaaagtttccttttatc-ttgtag

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 18
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggat---tctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaatatctgatggcacttact-agtgaagcacagtaaacattttaacttccattgttgcag
|| || || ||||| || || |||||| ||||  | ||||| ||||||||||||||||| |||||||||| ||||||||||||   | | ||  ||||    |        || |||||  | ||  |  |        |  ||||||      ||||  || |  |   |   | | | |    || || | ||     | |||                         
AATCTTTATTGGGCGGACAGTGGTGATCTAGTTGCAATTGCCAGTGATACATCATTCTACATCCTTAAGTTCAATgtgaggatcttttttaaaccttggtagtgagccagaactcttgtacatttccttagt-------ttattttcctagtactgttgctgttcgagacatggttttaagctgttttcttactgttctgctgtag------------------------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaata-tctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag
|| || || |||||||| || |||||||||||  | |||||||||||||| |||||||| ||| | |||||||||||||| ||      |  |  |||           ||  |||| |  | ||||         || ||  | |     ||  || | | ||| |  || |||| ||   ||  ||| |  ||                                
AATCTTTATTGGGCTGAAAGTGGTGATTTAGTAGCCATTGCTAGTGATACGTCATTCTACATCTTGAAGTACAATgtgagaatc-----tgttcaacct----------caaatgttcagctattat-------tttcattcccactttcgtggatt-gttcaaaagcttactctggtgttcctcgctattacag--------------------------------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaag-catcgttttcccccctatgtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag
|| || || |||||||| || |||||||||||  | ||||||||||| ||||||||||| ||| | || | ||| |||||||| ||    |    || || ||||  |        ||| ||| |||     |  ||| | ||  ||   |       ||||    |   |||                                                      
AATCTATATTGGGCTGACAGTGGTGATTTAGTAGCCATTGCTAGTGACACATCATTCTACATCTTGAAATTCAACgtgaggatcctgtccaacaaacactcttatgctg-------tgaatttctatatgcgattcatggattgtccaagtgctaacatggtgttcttgttatacag--------------------------------------------------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattctaaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgt---tttcccccctatgtttttggttaaatgaatatctgatggcacttac-tagtgaagcacagtaaacattttaacttccattgttgcag
|| || || ||||||||||| |||||||||||| | ||||| |||||| ||||||| || ||| | ||||||||||| ||  ||||   |  |||   || ||||   ||           |||||||| ||| |||| |   |||  |    |   | || |||  |  |  || |||    |  ||| |     | || |  ||| || || | ||     |      
AATCTTTATTGGGCTGATAGTGGTGATTTAGTGGCAATTGCAAGTGATTCATCATTTTACATCTTAAAGTACAATgtaagctttctccctttttggttctcttatcccac-----------ttttatgagaaatcatcatagatttgtcataaaatctattcgttttacaatcatttgagattaagtacctcacttaaca-accaaatatgttta-tttggcag------

upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 14
AACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATgtgaggattct-aaatacttgacccttttattttacacttgttgactttttatgaaaaagcatcgttttcccccctatgtttttggttaaatgaatatctgatggcacttactagtgaagcacagtaaacattttaacttccattgttgcag
||||| || ||||||||||| || ||||| ||| | ||||| |||||||||||||| || ||||| |||||||||||  |||| || ||||  || | ||| ||  |||| ||||||  | || |                  |  || ||||    ||||  ||||| ||   |    |||||     |     || | | ||| ||||    |  | | ||||||
AACCTCTATTGGGCTGATAGTGGGGATTTGGTGGCCATTGCCAGTGATACATCATTTTACATCCTGAAGTACAATgtatggatcctcaaattattaatcctctt--ttta-acttgtgtaattctc----------------ctttcctctatagaattggccaaatgcatgatttggagcact-----gcattccaaattgaactttttttaatttaattttgcag