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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgccacattcattgatgaaccgatttatttgtttgtatttttttccgacaagaatctttgaattattgctaagaaagttttgcag

Basic information

species Glycine max
transcript GLYMA08G21620.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21620.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgc--------cacattcattgatgaaccgatttatttgtttgtatttttttccgacaagaatctttgaattattgctaagaaagttttgcag
|||||||||||| |||| |||||| ||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||| ||        |||||| | || || |    |||| ||  |  |   ||||||    |    ||||| |   ||   |     | |  |||||
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgatgcag