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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACATATTTCAGgtatttatttatatatacagactttggaaggtgcttgtcaattatttttgataatccacttcagattaattataaattggaaaacatgttcaccaaataaccaactatatggaagatatctacaccatgaattatacacttgatttgtatacaactctaatttgagaacatttttcattttgcag

Basic information

species Glycine max
transcript GLYMA08G20980.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20980.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 5'ss of exon 14
TATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACATATTTCAGgtatttatttatatatacagactttggaag-gtgcttgtcaattatttttgata-atccacttcagattaattataaattggaaaacatgttcaccaaataaccaactatatggaagatatctacaccatgaattatacacttgatttgtatacaactctaatttgagaacatttttcattttgcag
 |  || |||||  |||||||  |||||||||| |  || |||| | |||| ||||||||||| ||||||||| | ||||| ||||||||||| |||||||||||| | | |   |   | |||   |||  |  |  ||||||   || | || |   |||       |||  |   ||    ||||||||  ||     |||                                                                                   
AACAGAAATCAGAGCAGATGCGCTGAAGCTGCTTGCCATGTTGAAGAGGCCAGTTCCTCGTGCTGCTGCAACAATTGGAGCTTGGCTTAACATCTTTCAGgtatttgtcttttgttttgggcttgaaaagtattgtcatcaattcacttggttataattactagtttccaatggtgtttt----aacatgtttcccgtgccacc-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022020|gb|CX708761.1|CX708761
EST:     CTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACATATTTCAG                         TTTCTTATACTGATGTCTATATGCACCAACTGTGCTCTTTTAGCATGGCTA
genomic: CTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACATATTTCAGgtatttattt ... cattttgcagTTTCTTATACTGATGTCTATATGCACCAACTGTGCTCTTTTAGCATGGCTA