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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATCATACATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactcagattatttacttttttattatactgcccatattcaaaattccattttaatagatattagatttcctctatacaatgatcacaagttcacaacaatgtgattgtactag

Basic information

species Glycine max
transcript GLYMA08G16620.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16620.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
TCATATCATACATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactcagattatttacttttttattatactgcccatattcaaaattccattttaatagatattagatttcctctatacaatgatcacaagttcacaacaatgtga--ttgtactag
|||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||| || |||||||| || |||||||||||||||| |           ||||  | ||||| |      |  || ||  |||  | |      |||||   |||  ||   | | |||||   |  | |  |  |  |||  ||||  |||
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaata-----------tactaatatattacagcttgtaggtttaagcttctttct------atattgagtttgttcctca-attgatcctgaactgatcaagacatgaacttgtggtag

upper sequence: GLYMA08G16620.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 5'ss of exon 12
TCATATCATACATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactcagattatttacttttttattatactgcccatattcaaaattccattttaatagatattagatttcctctatacaatgatcacaagttcacaacaatgtgatt-gtactag
||| ||||| || ||||| ||||| || ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| | || || || |||||||||||||   |   |      ||  | | | |  | |  | | | |     || |  | |   |  ||   || |   |  | |    || |  |   |     |     | ||   |||||
TCACATCATTCACATCGACTTTGGTTTTATGCTCTCCAATTCTCCTGGTGGTGTCAACTTTGAAAGTGCTCCTTTCAAACTTACGCGCGAGCTTCTTGAGgtaaccttagtaaacacaacaatctcagtcaatt--ctacagtggccgtttctgtattgcaattaa-ggactgattgaacatggggacctgactctttgtccggatcgtttcaaactag

upper sequence: GLYMA08G16620.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 5'ss of exon 12
TCATATCATACATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactcagattatttacttttttattatactgcccatattcaaaattccattttaatagatattagatttcctctatacaatgatc--acaagttcacaacaatgtgattgtactag
 || || || ||||| || ||||| |  ||||| |||||||| ||||||||||| || ||||||||||| ||||||||| | ||||| || |||||||||||||   |   |  |   |  || |   | | |||   |  | |    ||   | |||  ||  |||   |   |         ||| |  ||  | | |   ||||             
ACACATTATCCATATTGACTTTGGTTATATGCTCTCCAATTCTCCTGGTGGTGTGAATTTTGAAAGTGCTCCTTTCAAACTTACACGCGAGCTTCTTGAGgtaacttttgaaacaa--aacttctgggtgtgctgtata-gtactcgcttgtgtattacaagtgattgattcatcataggggtctgaccttactggattatttcaatccag---------

upper sequence: GLYMA08G16620.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ26597 (Selaginella moellendorffii), 5'ss of exon 12
TCATATCATACATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactcagattatttacttttttattatactgcccatattcaaaattccattttaatagatattagatttcctctatacaatgatcacaagttcacaacaatgtgattgtactag
      | | ||||| ||||| || |||||||| || ||||| |||||||| ||||||||||| |  || ||||| ||||| || || ||||   | |||| ||   ||        | || ||  |   |   ||   || |  ||  ||  |||  || || |                                                     
------CGTCCATATTGATTTCGGTTTCATGCTGTCTAATTCTCCTGGTGGAGTTAACTTTGAGAACGCCCCTTTTAAATTGACTCGGGAACAATTAGAGGCAAGTgtcg---ctgctgctgttgcacacttgcgcttgtacttgaacgtctttttccattgacag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924411|gb|AW830437.1|AW830437
EST:     GTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACNTGAACTTCTTGAG                         GGTATGGATTCTGATGCTGAGGGTGTTCCAA
genomic: GTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactca ... attgtactagGTTATGGATTCTGATGCTGAGGGTGTTCCAA