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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataattctaaattggcttaaatatctttttggtccttcaaatttggactaagtttgcttttgtccctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcag

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 14
lower sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 13
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataattctaaattggcttaaatatctttttggtccttcaaatttggactaagtttgcttttgtc---cctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcag
|||||| ||||| || ||| ||||  | | | ||||| ||||||| |||||||| ||||| |||   ||||| ||||||||| ||||||||||||||||||| | |||   | || ||||  | ||| | |        |  |       ||| | ||||  || ||  |    ||||  |  ||   ||   ||  ||  ||  || |                                                                                          
GAAGAAGATACCGTCTATAAATGGCGACATAGTGGGACTAAAACTAGAACAGTTCATATTCGATTGCTTTCCTTATGCTCCTTCGACTGCACTTTTTGAGgt-attatttctttatattgtatgaaaca-cacacaaaccgatatttgcaggattcagttaactgttagcaaatctcatttcctactgtggggtttcttgtctttttag------------------------------------------------------------------------------------------

upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 14
lower sequence: AT1G31070.2 (Arabidopsis thaliana), 5'ss of exon 13
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtg-actataattctaaattggcttaa-atatctttttggtccttcaaat-ttggactaagtttgcttttgtccctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcag
|||||| ||||| || ||  ||||||| ||||||||| ||||||| ||||| || || |||||| | ||||| ||||||||| | || ||||||||||||||  | ||| | |  |  ||  |  || |||     |        ||||| ||  |    |     ||  ||    | |  | ||                                                                                                                  
GAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAACCGCACTTTTTGAGgtatagtatcaattcatttttacacaatatactaactaaagaaaccaaatattaaaaactgagaaattgggttgtgctatgtgtag-----------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 13
GAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataat-tctaaattggcttaaatatctttttggtccttcaaatttggactaagtttgcttttgtccctcaaattttaaattgattttcttttcctgatttggaaatagtctacacttgatccttaatttgtgatctctttagtccctaataaagaccaaaagcgagctactcattatgcatccatgttcag
|||||||||  |||| |  || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| | |||||||||| |||||||| | |  | ||| | || |    |  |  || ||   || ||  | |||   | | | |   ||      |     | |      || |||                                                                                                       
GAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCAACTGCACTTTATGAGgtgatttttctctctcactttgacccagcaatttattttcccatctcacttgattttaatctcacttgaaaattt---ctctgcgccaatattcag-----------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191545|gb|GD992781.1|GD992781
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|254342038|gb|GR853175.1|GR853175
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|4313957|gb|AI461076.1|AI461076
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|8282791|gb|BE020352.1|BE020352
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|193334482|gb|FK301730.1|FK301730
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|298176684|gb|HO026805.1|HO026805
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
EST: gi|151397105|gb|EV266978.1|EV266978
EST:     AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAG                         GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGgtgactataa ... ccatgttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT