Sequence
atgc intronic sequence ATGC exonic sequenceGATTTTGAGGACTCTTTTGGCAAAAGAAAAGGTGGACAACGAACTTGAGTTTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGgttgctgctattcttttatattgttcacattggatataacactatcgtgtaacaagtgctttttgttttccgtgcttttaattatatcatttattcattgtcaacctgtccatcgtag
Basic information
species | Glycine max |
transcript | GLYMA08G02260.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G02260.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 12
GATTTTGAGGACTCTTTTGGCAAAAGAAAAGGTGGACAACGAACTTGAGTTTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGgttgctgctatt--cttttatattgttcacattggatataacactatcgtgtaacaagtgctttttgttttccgtgcttttaattatatcatttattc---attgtcaacctgtccatcgtag
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CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAAGGCTGAACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtaacatgaactctcgatttattttttctgagaatg----tgtaagagagctgtgtatcgttgtattgagaactaaagtagagatcaattctgctcgatcctgaattcttctttaacag
upper sequence: GLYMA08G02260.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G058491_T01 (Zea mays), 5'ss of exon 12
GATTTTGAGGACTCTTTTGGCAAAAGAAAAGGTGGACAACGAACTTGAGTTTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGgttgctgctatt---cttttatat-------tgttcacattggatataacactatcgtg--taacaagtgctttttgttttccgtgcttttaattatatcatttat-tcattgtcaacctgtccatcgtag------------------------------------
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CATAATGCGGCGACTTCTGTCAAAGGAGAAAGTTGATGAAGGGCTGGACTTCAAGGAGCTAGCAACCATGACAGAAGGATATAGTGGAAGTGATCTCAAGgtcagtagcatgaaacatgaatgcgcacacatgcccccatgaaaaacaaaggcaccatgctcaacaccgatttatttttctgagaatacgcaagatagttgtgtatctctgtattaagagctaaagtagagatcaattatgctcgacactgaattcttctttaacag
upper sequence: GLYMA08G02260.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv02s0025g00650.t01 (Vitis vinifera), 5'ss of exon 13
GATTTTGAGGACTCTTTTGGCAAAAGAAAAGGTGGACAACGAACTTGAGTTTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGgttgctgctattcttttatattgttcacattggatataacactatcgtgtaacaagtgctttttgttttccgtgcttttaattatatcatttattcattgtcaacctgtccatcgtag
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GATCATGAAGACTCTTTTGTCAAAAGAAAAAGTTGCAGAAGGATTAGATTTCAAGGAGCTTGCAACCATGACAGAAGGATATAGTGGAAGTGATCTTAAGgttggtatt----tctcagaacg--------gggttctgtgctttgatgca-taatcaggtgttcttgactgcagcttaacttttttaatacag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16348165|gb|BI973760.1|BI973760EST: TTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAG AACTTGTGCACAACTGCTGCTTATCGGCCTGTTAGAGAGCTAATTCAGCAA
genomic: TTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGgttgctgcta ... tccatcgtagAACTTGTGCACAACTGCTGCTTATCGGCCTGTTAGAGAGCTAATTCAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTTTGAGGACTCTTTTGGCAAAAGAAAAGGTGGACAACGAACTTGAGTTTAAGGAAATTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGgttgctgctattcttttatattgttcacattggatataacactatcgtgtaacaagtgctttttgttttccgtgcttttaattatatcatttattcattgtcaacctgtccatcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG