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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag

Basic information

species Glycine max
transcript GLYMA08G01800.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgta-tgcattatatccgtttaatgctttttatgttgcgtatctagcctaattta--cttagcaactgcttttctactag------------------------------------------------------------------
 |||  ||||| ||||||  |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||| || ||||| || || || |||||| |   || || |  | |  | ||   |  |    ||   || | ||  ||   |||    | || | || |||| |                                                                  
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagccta-atttact-tagcaactgcttttctactag--------------------------
||||||||| | ||||||| | ||| |||| ||||||||||| || ||||||||||| ||||| |||||||||||||| || || || ||||| || |||||||| ||  | || |  |||   | || || |    ||| |     | |  |||| | |  | |  |  | | || |                          
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatg-atgctctcagcataagaatattgatctaatttatgtcattgagaagtactattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag---------------------------
 |||   || |  ||||| |||||| |||| ||||||||||| | ||||||||| || ||||| ||||| |||||||| || ||||| ||||| || |||||||  | ||   | ||||||    ||  |    ||  | ||   ||    ||  || ||   |   |  |   |                            
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttacta---ctgtttaactaattcaagacagcaaacctgctctg--ctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag--------------------------------------
 ||||||||||  || ||| | ||| |||| ||||||||||| |||||||| || || || || ||||| |||||||| || ||||| ||||| || |||||| ||   |  || |   ||     |||    ||  ||| |    |    | |      | | || | |    |                                       
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgt-ttaatgctttttatgttgcgtatctagcctaatttact-tagcaactgcttttctactag----------------------
 ||||| || | ||  ||| | ||| |||| ||||||||||| ||||||||||| || ||||| |||||||||||||| || ||||| ||| |||| |||||||| |   |||| |     |    |||| |      | | |||  |  |||||  | |    |   |||  | ||                       
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagc-tatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatg-cattatatcc-----------gtttaatgcttttta--tgttgcgtatctagcctaatttacttagcaactgcttttctactag
||||   || |  || ||  ||||  |||| |||||||||||||  ||||| || || ||||| |||||||||||||| || |||||||| || || |||||| | |   | | |            ||| |||   |  ||   || |||    |||       | | |  ||     |||| | ||||
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaagacggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattagtaattggtgcctgacattgttttttttcctag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatcta-gcctaatttacttagcaactgcttttctac-tag-----------
||||   || |  |||||  ||||  |||| |||||||||||||  ||||| || || ||||| |||||||||||||| || |||||||| || || |||||| |         | |  |||        ||      || || ||||       |||  ||||| |  |  || | |           
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacgagggcagggcttgaaataacaaagttgaaattgatataagccttgggatattactaactgttgcttgacattgttttttcttag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatcc-gtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag---------------------------
 |||   || |||| |||  ||||||||||  |||||||||| |||||||| ||||||||||||||||| || || || || |||||||| |||||||||||| | |  || ||  ||||  | |||| ||| ||   |||  | | | | |  |  |    ||  ||  | |  |                            
TTTCTTAGATACTCGACCTATGATTCGATCCATTCTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTATACGATGgtaagaaacatgtctagttttgttctttatatatt---tatgcatcatgagtctcc-aatttctctttgccaaaaaaaaaagagtctcgaatttctaaccattt

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagc-----ctaatttacttagcaactgcttttctactag-----
 |||   || |||| |||||| ||||||||  |||||||||| || ||||||||||||||||| |||||||| ||||| || ||||| || ||||| ||||||      |     | ||  || |    || |    || | |         | |||   || ||  | || || | | |      
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattt-tgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttt----tatgttgcgtatctagcctaatttacttagcaactgcttttctactag-----
|||    |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| |     |   |||             ||||||    |  |  |    | |||||  ||       || |  |       
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S34_101V6.1 (Physcomitrella patens), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag-----------------------------
 ||    ||||| || |||||||| || |||||  | ||||| |  ||||| ||||| ||||||||||| ||||| || || |||||||| ||||| ||||||    |    |    || ||  | ||||  |     |  ||||  ||| ||  |   |  || ||  |||| |                              
TTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTATACCATGgta-atgtccactttacttcattttatttagttcagccagatagc--aatctaaattata--tgattccctaccattgccatatttttgccatgcttaagttgtc

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatat-ccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | ||    |  ||     ||  |      ||| |    ||                            
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag-------------------------

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | ||   | ||   |    |   ||||   |        |||| ||   ||                
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattatttgcaact--------atttgctgtacag---------------

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag
 ||   |||  | || || ||||||||||| || |||||||| | ||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||| ||  |     |  |||  | ||| | | ||     ||||   | ||  |                       
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttag-gatttgtgtatta-acgtcta--ttgatgcag----------------------

upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag
 ||   |||  | || || ||||||||||| || |||||||| | ||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||| |   |     |  |||| | ||| | | ||     ||||   | ||  |                       
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctccgttaa-gatttgtgtatta-acgtcta--ttgatgcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207697617|gb|GD680458.1|GD680458
EST:     AAAGACATATACGATG                         AGTGGACCTGGCCTATCATCAAAATCAGATTGGGGAGTCAACTATCGGGCG
genomic: AAAGACATATACGATGgtatgcatta ... tttctactagAGTGGACCTGGCCTATCATCAAAATCAGATTGGGGAGTCAACTATCGGGCG