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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGTCTTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaatattttgaattacaattttgtttaaactcatctagtttcccagtactgattgctttgtttttcattgcttgtcag

Basic information

species Glycine max
transcript GLYMA07G40230.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 13
TGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGTCTTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaatat---tttgaattacaattttgtttaaactcatctagtttcccagtactgattgctttgtttttcattgcttgtcag
|||||| || ||||| ||||| || ||||| |||||| ||||  |||||||||| || ||||||||||||||  |||| || ||||| || || || ||||| ||  ||     |||   ||| ||| || | |  |    |     ||     ||    ||| ||| |||||||| |        
TGGAGCATTCTCTGTATTGAAGGAGCTTGTTGTTGTACTGCCAGACTGTCTTGCTGATCATATTGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttggtgattcccattttgcttaaaatattatgtgcaggacttctacttgttgctaac--ttgttttctttttcatag--------

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 14
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 5'ss of exon 13
TGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGTCTTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaatattttgaattacaattttgtttaaact--cat-----------ctagtttcccagtactgattgctttgtttttcattgcttgtcag-
|||||| || |||||||||| |||||||||||||||  ||||  |||||||||| || |||||||| |||||  |||| ||||||||||  ||  |||||||  |      | |  |||||| || | | |  |||  ||            ||  ||| | ||| || ||   ||   | ||  || ||| ||   
TGGAGCATTCTCTGTTTTGAGAGAACTTGTGGTTGTCCTGCCTGACTGTCTTGCTGATCATATTGGTTCACTTGTTCCTGGAATTGAAAGGGCGCTAAATgttagtggatatattcattacacttatttatggactgtcactgtcagtgttgctctttttcaagtgctcatgttttctctattttttacttctccag

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 14
TGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGTCTTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaatatttt----gaattacaattttgtt-taaactcatctagtttccca----gtactgattgctttgtttttcattgcttgtcag------------
||| || ||||| ||||||||||| ||||||||||| |||||  |||| || |||||||| ||||| ||||| ||| | ||||| ||||||||  ||| ||||    | || ||     | | |  ||| | || |  |||  | || ||| | |     | ||||     | ||||||  ||  || ||              
TGGTGCATTTTCAGTTTTGAAAGAGCTTGTGGTTGTCTTGCCAGACTGCCTGGCAGACCACATTGGATCACTTATTTCGGGAATCGAAAAAGCGCTAAGTgtacattaaatcttctctaattaattattgtattatggacttgtatattttactatgtgatgctgacattgtggttttttcttctttctccattttcttaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208237341|gb|GE035209.1|GE035209
EST:     TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|208234729|gb|GE032372.1|GE032372
EST:     GAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: GAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|193727443|gb|FK663317.1|FK663317
EST:     CACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: CACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|208119686|gb|GD920209.1|GD920209
EST:     TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|207703777|gb|GD684423.1|GD684423
EST:     TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA