Sequence
atgc intronic sequence ATGC exonic sequenceATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgctaaatttggtttgattgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag...
Basic information
species | Glycine max |
transcript | GLYMA07G38050.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: 13113.m00246 (Oryza sativa), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgc-taaatttggtttga-ttgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag
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ATTGACCGTATCATAGCTAAAGGAGAGGAAACAACAGCTGAGCTTGATGCAAAAATGAAAAAGTTCACAGAGGATGCTATTAAATTTAAAATGGATGACAgtatgtacccttctcccgcagtctctttctttctatcactcaggtctaacttagtctttttatgcag-----------------------------------
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgctaaatttggtttgattgatgtcgttagaaatctattttgttgtttaaattcc-tgtatacccataag---------
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ATTGACCGCATCATCGCTAAGGGAGAAGAAGCAACAGCACAACTTGATGCAAAAATGAAGAAGTTCACAGAAGATGCTATTAAGTTCAAAATGGATGACAgtatg--accctctctctctctctctctctctctcaatatc--tctcacacacttccttc----tctatgtc--tgcatatattcagtacaaactcataaagtttggtct
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 11
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgctaaatttggtttgattgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag
|||||| | ||||| ||||||||||| || ||||||| || |||||||| || |||||||| || ||||| ||||| |||||||||||||||||||| |||||||| | || | | | | | || ||| | | || | |||||| | || ||| || |
ATTGACCGTATTATAGCTAAAGGAGAGGAGACAACAGCAGAACTTGATGCGAAAATGAAAAAGTTCACTGAGGATGCCATCAAATTTAAGATGGATGATAgtatgtacctgttttctgtttctatttcttgtgacttattctctctttctgtgtcttctgtcaatctacctaacaccttttattttctgatgcag-----
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgctaaatttggtttgattgatgtcgt-tagaaatctattttgttgtttaaattcctgtatacccataag
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ATTGACCGTATTATAGCTAAAGGAGAGGAGACAACAGCTGAACTTGATGCAAAAATGAAAAAGTTCACAGAGGACGCCATTAAATTTAAGATGGATGATAgtatgtacctgctccctgt---tcttatgtcttctgacgttctctgctcctatgtcttatgttttcctacctaaacactttattttctg-atgcag-----
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatg--taacctttaaatataaattctggctttgctaaatttggtttgattgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag
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ATTGATAGAATCATTGCCAAAGGAGAAGAGGCAACAGCTGAACTTGATGCTAAGATGAAGAAATTCACAGAAGATGCTATACAGTTTAAAATGGATGACAgtaagggtgtcacttacctactatttc---ccctattaggttgtgtgaatattgtaatgttttga---taatctgttgttttatttgttgtag---------
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatg--taacctttaaatataaattctggctttgctaaatttggtttgattgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag
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------AGAATCATTGCCAAAGGAGAAGAGGCAACAGCTGAACTTGATGCTAAGATGAAGAAATTCACAGAAGATGCTATACAGTTTAAAATGGATGACAGTAAGGgtgtcacttacctactatttc---ccctattaggttgtgtgaatattgtaatgttttga---taatctgttgttttatttgttgtag---------
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgctaaatt--tggtttgattgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag
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ATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATACAGTTTAAAATGGATGACAgtaagtg--tgctatttatccctttttccaatggtaactcccttgcatgggtaatgggatgtccaaacaagatagtt-tttggtttgttgcag---------
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaa-ttctggct------ttgctaaatttggtttgattgatgtcgt-tagaaatctattttgttgtttaaattcctgtatacccataag
|| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| ||||||| || | ||| || || || | | ||||| | | | | |||| || ||| |||| | || | | |
ATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATAgtatgtggatccactatccagggctctcactcattatttacttatctacttttgaaagttatggggctaaaatataatttaacatttatcctgctttgttcag-----
upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 14
lower sequence: EFJ06565 (Selaginella moellendorffii), 5'ss of exon 14
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgctaa-atttggtttgattgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag
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ATTGATCGCATCATTGCAAAAGGAGAAGAAGCCACTGCTGAACTTGATGCCAAGATGAAGAAATTTACGGAGGACGCCATCAAATTTAAGATGGACGACAgtaagttctagtgcgtttttgtgttctccttatctagcgtttcgtttaacag-------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208048104|gb|GD848771.1|GD848771EST: TAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACA CTGCTGAGTTGTATGATTTTGATGATGAGAAG
genomic: TAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacc ... cattttgtagCTGCTGAGTTGTATGATTTTGATGATGAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACAgtatgtaacctttaaatataaattctggctttgctaaatttggtttgattgatgtcgttagaaatctattttgttgtttaaattcctgtatacccataag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA