Sequence
atgc intronic sequence ATGC exonic sequenceGACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag
Basic information
species | Glycine max |
transcript | GLYMA07G37050.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g23610.2 (Oryza sativa), 5'ss of exon 13
----------------------------GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag
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TTTGCTCAACGCTGTTTACATCCCCCAGGACATCAAGTTTGCTGTTCATGCACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgta---tatacattatttgtc--------attgttgttttgtaa--ttatttgcac--caataata-----tagtcaactgta-cgtgatatgcctcttttcag---------------------------------------------------------------------
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 14
GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag
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GACATCAAGTTTGCTGTTCATGCACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgta---tatacattatttgtc--------attgttgttttgtaa--ttatttgcac--caataata-----tagtcaactgta-cgtgatatgcctcttttcag---------------------------------------------------------------------
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 14
GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag
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GACATCAAGTTTGCTGTTCATGCACACCCAACATTGTCCGAGGTGCTGGACGAACTCTTTAAAGCAGCCAAGgtacact-----tcagcgctcc-------atttttctcttgtg----tttagaatccttgaccacat----ttctgaacagctgcaagctattcttttttttttccttcccaacag---------------------------------------------------------
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 14
GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag
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GACATCAAGTTTGCTGTTCATGCACACCCAACGTTGTCTGAAGTTCTGGATGAACTCTTCAAGGCTGCCAAGgtacat--gtgcctatttgccct----tatgctatatagtatatacata-------aatgattctttgtg-tgaaaaatacaaacaaaatttgtgccctgtaccaaaaacgtgaacaaaaattgccttgacctttttctccttcaacag------------------------
upper sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G16950.2 (Arabidopsis thaliana), 5'ss of exon 14
GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag
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GACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGgtaaagcaa-----aacagtctcctcatgccattgatcagagagcccctttat--tcttaactgcaatcaat--agatttaagtcctctactaaaaagcaaaagaat----cttacactataagttcaatttttcag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6913436|gb|AW394966.1|AW394966EST: CACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAG GTTAAAGCACAAGCTTCTAGCCCA
genomic: CACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaat ... actgaggcagGTTAAAGCACAAGCTTCTAGCCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG