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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGGTGTTCCAGATGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacatgttggattgagattttttaggttgattgattctgattttaacattcttcgcag

Basic information

species Glycine max
transcript GLYMA07G36550.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g19970.1 (Oryza sativa), 5'ss of exon 14
GTCAGGTGTTCCAGATGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacatgtt--------ggattgagattttttaggttgattgattctgattttaacattcttcgcag
 |||   || ||  |||||||||| |||| | |  |  |  | |||||| | | ||||||| |||| |||||||| || ||| | ||||||||||||||||||  |     | |||         |  || |||  ||  |||     || || || | | |    |     |||
ATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCAgtaagtagatcttccctgtgactttgaagagtttagaccttacaggcaacctgcttatgttataacttattcctacag

upper sequence: GLYMA07G36550.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0077g00620.t01 (Vitis vinifera), 5'ss of exon 14
GTCAGGTGTTCCAGATGGGCAACCCAAATTGTTGCTTTCCCTGATCCCAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaaagcacatgttggattgagattttttaggttgattgattctgattttaacattcttcgcag----------------------
 || ||  | |||||||  || || ||| |||||||||| ||||| |||   |  ||| | ||||| |||||||| ||||||||||||||| ||||||||||| | |        ||   |||| |||||  |     |   |    ||  |  |  ||   |  |                       
ATCGGGATTGCCAGATGCACAGCCAAAACTGTTGCTTTCTCTGATTCCAAGTTATCCATTATTGAATTTCATGCTCACTACTTCCATATATATTGCAgtaagtaacagattttattttctttgaaattttgaaaaaaaaaaaaaaaagaaatctaggttgaccaaacccaccaatctcctactgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338448|gb|CO982314.1|CO982314
EST:     CAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCA                         ATTTCCTATAGGCTCTTTGACCTGACAAATACACTGAAAATGGCATTTGTA
genomic: CAGACTTCCCAATGTTGAACTTCATGCTTACTACTTCCATATATGTTGCAgtaagttaaa ... ttcttcgcagATTTCCTATAGGCTCTTTGACCTGACAAATACACTGAAAATGGCATTTGTA