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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtctttatgttttcacacggtgccatctatattttcttttttgtaatgttattttgtacaactttttcattttcaatatacggcttctgaaaagt...

Basic information

species Glycine max
transcript GLYMA07G35280.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35280.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G100707_T01 (Zea mays), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtctttatgttttcacacggtgccatctatattttcttttttgtaatgttattttgtacaactttttcattttcaatatacggcttctgaaaagt
|| ||||||||||| |||||||  ||  ||||| ||||||| ||||||||  |||| ||||||||| | ||||| || ||||||||||| ||||      | ||            || |    ||  |||||||    ||   | || ||  || |     | ||| || ||||  |   | ||| |    
GTCTGGAAGAAAGTTGTATATGTCGACAGACTTGTGCAGCTATTCAGATATGTACCACGTGAACAGCTCACCATTCCTGATTTTGTGTTCCAgtaagcaatcta------------gtacttgttagcttttcttagaggtc-cgctagttactaga----ctccatcttaaataatcaa-tcctgcag---

upper sequence: GLYMA07G35280.2 (Glycine max), 5'ss of exon 14
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtctttatgttt-tcacacggtgccatctatattttcttttttgtaatgttattttgtacaactttttcattttcaatatacggcttctgaaaagt
|| ||||||||||| |||||||| || |||||||||||||| |||| |||| | |||||||| ||| |||| |||||||| ||||| || ||||    ||  | |  |  ||||||  |   | |  ||||   || |   |  |||| ||   ||| |    ||   |   ||  | | |            
GTATGGAAGAAAGTTGTATATGCAGACCGACTTCTGCAGCTGTTCAAATACGTTCCTCGTGAGCAGCTGACAATCCCAGACTTTGTTTTCCAgtaagttcactctactcctcacactctagtaacgttattcagttctcgatt-tgtt-ttacttactagaccttgtgtgaaaaattgcag------------

upper sequence: GLYMA07G35280.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtctt-tatgttttcacacggtgccatctatattttcttttttgtaatgttattttgtacaactttttcattttcaat-atacggc-ttctgaaaagt
|| ||||||||||||||||||| ||| |||||  ||||||| ||||||||| | || ||||| |||||||| ||||| || |||||||||||||||||| || | |  |||  ||   |     || | || ||  || |  |     |  ||    |||  |  ||  |  ||| | | ||| |||   | || 
GTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCAgttgagttttctgttctttttcaaaatctggact-tgttctcaattatcaataaccaagtta-gtaaccgtcccacatctaattaaaaggcattcctgatag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523658|gb|BU082469.1|BU082469
EST:     TTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA                         GCATGACTTGGAAGTGAATGGAGGGACGGGTCTCATTGTGGATCCCAGAAC
genomic: TTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAgttgagtctt ... attcacacagGCATGACTTGGAAGTGAATGGAGGGACGGGTCTCATTGTGGATCCCAGAAC