Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTGGGACAAATTTGAGGATTCATACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgttatatttttcaaattttaaaaatgatatgctgtcatttcttacaattttggctagattattgtctctattcattctataatgattaaataaactgtct...
Basic information
species | Glycine max |
transcript | GLYMA07G35090.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G35090.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g16970.1 (Oryza sativa), 5'ss of exon 13
GAGCTGGGACAAATTTGAGGATTCATACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgttatatttttcaaattttaaaaatgatatgctgtcatttcttacaattttggctagattat-tgtctctattcattc-tataatgattaaataaactgtct-----------------
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GCGCTGGGACAAATTTGAAGAATCCTACAGAGTAATGCAATTTTCAAATGGAGACAGATGCTGGAATGGCCCTGACCGAAGTCTAAAGgt---gcttctcc--tttt--------catgccttcgtgcccgttatcttaagatggattgtctgtttctgtttgcaggtcttgaaacttaataaaatatggcttgccttatgatacag
upper sequence: GLYMA07G35090.1 (Glycine max), 5'ss of exon 14
lower sequence: AC213600.3_FGT002 (Zea mays), 5'ss of exon 13
GAGCTGGGACAAATTTGAGGATTCATACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgttatatttttcaaattttaaaaatgatatgctgtcatttcttacaattttggctagat-tattgtctctattcattctataatgattaaataaactgtct
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GCGGTGGGACAAATTTGAAGATTCGTACAGAGTGATGCACTTTTCAAGTGGAGACAAATGCTGGAATGGTCCTGACCGAAGCCTAAAGgtagtatgtct--atctgcatgccctttctggttgcaggttcta-aattctaactctttctgttgtttacactcgtgcag---------------------
upper sequence: GLYMA07G35090.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G052875_T02 (Zea mays), 5'ss of exon 13
GAGCTGGGACAAATTTGAGGATTCATACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgttatatttttcaaattttaaaaatgatatgctgtcatttcttacaattttggctagattattgtctctattcattctataatgattaaataaactgtct
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GAGATGGGACAAATTTGAAGAATCGTACAGAGTAATGCACTTTTCAGGTGGAGACAAATGCTGGAATGGTCCTGACCGAAGCCTAAAGgt-aggtaactctacttgcatgccctttctgtttgcaggttctaaattccaaccctttctgttgtttatgctc-tcgtgcag------------------
upper sequence: GLYMA07G35090.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv06s0004g00140.t01 (Vitis vinifera), 5'ss of exon 13
GAGCTGGGACAAATTTGAGGATTCATACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgttatatttttcaaattttaaaaatga--tatgctgtcattt-cttacaattttggctagattattgtctctattcattctataatgattaaataaactgtct
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GCGCTGGGATAAATTTGAAGATTCATACAGAACTATGCTGTTTTCAAATGGCGAAAAATGCTGGAATGGACCTGATAGGAGTTTGAAGgtaacgaccataatgttcttacattggatcatgtattcattggtttataataatggtgacacgactgccttgcacctttaactagcttttgaactggtag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192297387|gb|FG990679.1|FG990679EST: TGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAG GTCAAGCTAAGATGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA
genomic: TGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgttatatttt ... cttttaacagGTCAAGCTAAGATGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTGGGACAAATTTGAGGATTCATACAGAGTAATGGTGTTTTCTAATGGTGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGgttatatttttcaaattttaaaaatgatatgctgtcatttcttacaattttggctagattattgtctctattcattctataatgattaaataaactgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG