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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattgaccttaaatttagcttctaagcataacaaaatggagaagtggccaaatgagcaatgccctatgacaatgacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcag

Basic information

species Glycine max
transcript GLYMA07G18470.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18470.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g28200.2 (Oryza sativa), 5'ss of exon 13
TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtaca----tattgac--cttaaatttagcttctaagcataacaaaatggagaagtggccaaatgagcaatgccctatgacaatgacatctttttagagtaaattattctaaactaattgaacactcgt-gtttgcag
||| | || |||||||||||||||||||| ||||| || ||||| ||||| |     | ||  |  ||| |||| |              |   ||   |||   |||||   || |    |    |||||  |   |     | ||| |  |  ||    | |||   ||| | |     |||||
TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAGgtgcgcttctgttagcttcttcaattcattcatctcttccttccccattctgaaactgccaagc-agtagaaactggagacaaccaacgc-----acagtcatctgatcagtgc-aatcttacatttgccaaatgcag

upper sequence: GLYMA07G18470.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G162672_T01 (Zea mays), 5'ss of exon 14
TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattgacct-taaatttagcttctaagcataacaaaatggaga--agtggccaaatgagcaatgccctatgacaatgacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcag
||| |||| ||||| |||||||||||||| |||||||| |||||||||||     |   |   |      |   ||| |  |   |  |         ||        |    || |  ||  |  | ||   |  ||   |||||                                    
TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttcagctggttctcccactctcttactacttccgatccagctccagctcttccctttctaaaggtcttaggtagtgtt-tggttccggagtatgg---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589810|gb|BI674426.1|BI674426
EST:     TTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAG                         GCTAGTGCACAGCCATTTTTGGTGCTTGGTCTGTTGGTTACTGCTCTAGCA
genomic: TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattg ... gtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCA
EST: gi|192328988|gb|FK021399.1|FK021399
EST:     TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG                         GCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCA
genomic: TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattg ... gtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCA