1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CCAAAGGCAAGTATCCTTAGACCAAGATCAGAGCTCAATGCTTAAAGTGATTTGTAATCAAAGAGATCGATTTAGGACCCGCTTGCGAGAGACAGAAGAGgtatgtttataatcaaccaaattttagattatggatatgacagtgtaacgagtgttgacttgggtgaatttttcacttttaatag
species | Glycine max |
transcript | GLYMA07G09890.3 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTTGTAATCAAAGAGATCGATTTAGGACCCGCTTGCGAGAGACAGAAGAG GAAATAAGGCAGTTGAAGGAGAAGATTGGGGTATTAACAGTGGAACTGGAAEST: gi|193690259|gb|FK634556.1|FK634556
genomic: TTTGTAATCAAAGAGATCGATTTAGGACCCGCTTGCGAGAGACAGAAGAGgtatgtttat ... cttttaatagGAAATAAGGCAGTTGAAGGAGAAGATTGGGGTATTAACAGTGGAACTGGAA
EST: CGAGAGACAGAAGAG GAAATAAGGCAGTTGAAGGAGAAGATTGGGGTATTAACAGTGGAACTGGAAEST: gi|9205354|gb|BE331578.1|BE331578
genomic: CGAGAGACAGAAGAGgtatgtttat ... cttttaatagGAAATAAGGCAGTTGAAGGAGAAGATTGGGGTATTAACAGTGGAACTGGAA
EST: TTTGTAATCAAAGAGATCGATTTAGGACCCGCTTGCGAGAGACAGAAGAG GAAATAAGGCAGTTGAAGGAGAAGAT
genomic: TTTGTAATCAAAGAGATCGATTTAGGACCCGCTTGCGAGAGACAGAAGAGgtatgtttat ... cttttaatagGAAATAAGGCAGTTGAAGGAGAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGGCAAGTATCCTTAGACCAAGATCAGAGCTCAATGCTTAAAGTGATTTGTAATCAAAGAGATCGATTTAGGACCCGCTTGCGAGAGACAGAAGAGgtatgtttataatcaaccaaattttagattatggatatgacagtgtaacgagtgttgacttgggtgaatttttcacttttaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC