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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaacaatttttaatgtagtattgccatcaaatttgtgaatcattttaattgtaacattttttattttgtttttgtgcag

Basic information

species Glycine max
transcript GLYMA07G03930.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G161969_T01 (Zea mays), 5'ss of exon 9
GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaacaatttttaat-gtagtattgccatcaaatt-tgtgaatcattttaattgtaacattttttattttgtttttgtgcag
||||| |||||||||||  | || || ||||| |||||||| ||||||   ||||||| |||||||||||||||  | |   || | | ||| |       ||  ||| | |    |  |  |   || | |  |   | ||  || | || |||
GCTGCAGCTTTGGCTCTTAGAAAGGTCCCTCAGTGTAACAGCTCATGGATGAATGATTTTATTCGCCAgtaagttcatatggttcatttgtactggaaaggtcctattatctcgtaccctagagcagttaaaaatggcacttatttctggtacag

upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 14
lower sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 15
GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaacaatttttaatgtagtattgccatcaaatttgtgaatcattttaattgtaa---cattttttattttgtttttgtgcag
||||||||  ||||||| || ||||||||||| || || ||||||||| || |||| || || |||||||||||  | | | | |     ||  ||      || ||||  |||||| |   || |     | | ||||  |   ||| ||| |||
GCTGCTGCACTGGCTCTTCGAAAAGTTCCTCAGTGCAATAGTTCATGGACAGATGAATACATCCGCCAgtaagtacatattctgtttcagag-gttcatgaaaactttgcaaatcatctagtttcttggttcttattttcctccttttatgtacag

upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 15
GCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaacaatttttaatgt-agtattgccatcaaatttgtgaatcattt-taattgtaacattttttattttgtttttg-tgcag
||||||||||||||||| || |||||||||||||| || ||||||||| | ||||| |||||||| |||||||| |   || ||  |||| |  ||||| ||  ||||     ||||  |  | |  ||||||||||  |||||    |  | |||
GCTGCTGCTTTGGCTCTTCGAAAAGTTCCTCAATGCAATAGTTCATGGACCAATGACTATATTCGTCAgtaagtaatagatcttagatgttaacattgctatttaattaccatatcacatacactcttaacatttttctttttgggactaatccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309363|gb|FK000571.1|FK000571
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
EST: gi|298166277|gb|HO009248.1|HO009248
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
EST: gi|192309362|gb|FK000570.1|FK000570
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
EST: gi|8827585|gb|BE211315.1|BE211315
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT