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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgccccatacattgttaaatcaatttatttgtttgtatttatttccaacaagaatctcttaattattgctatgaaatttttgcag

Basic information

species Glycine max
transcript GLYMA07G01950.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgc--------cccatacattgttaaatcaatttatttgtttgtatttatttccaacaagaatctcttaattattgctatgaa-atttttgcag
|||||||||||| |||| |||||| ||||| ||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| |||||| ||        | |||  | ||||  ||   |||| ||  |  |   | ||| |    |   |   ||||| | ||   ||   | |  |||||
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcct-ttttctttgacttttctttaatcaatgaattgtccaatgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11412962|gb|BF424973.1|BF424973
EST:     CCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAG                         GAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCTCTAGACATT
genomic: CCCCCCTTTTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcccca ... atttttgcagGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCTCTAGACATT