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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttctttcctcggcattgtccatttcctttaaattaactctaacacagggtttcaatattaactgttgttaaaatactgattgacatggaagca...

Basic information

species Glycine max
transcript GLYMA06G20360.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208089754|gb|GD889143.1|GD889143
EST:     TTTTAGTGATTCCTCATGACGGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: TTTT-GTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|120494823|gb|EH222990.1|EH222990
EST:     ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|51343333|gb|CO984066.1|CO984066
EST:     ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|6666498|gb|AW277892.1|AW277892
EST:     ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG                         AATNTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|193427222|gb|FK394802.1|FK394802
EST:     TAAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: T-AACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|193518433|gb|FK476690.1|FK476690
EST:     AACTTCCTAACTTTTGTGAATTACCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAA
genomic: AACTTCCTAACTTTTGTGA-TT-CCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAA
EST: gi|193515357|gb|FK474697.1|FK474697
EST:     AACTTCCTAACTTTTGTGAATTACCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAG
genomic: AACTTCCTAACTTTTGTGA-TT-CCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAG
EST: gi|5761267|gb|AI966630.1|AI966630
EST:     ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|193458393|gb|FK424154.1|FK424154
EST:     ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|120494951|gb|EH223118.1|EH223118
EST:     ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
genomic: ATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGAT
EST: gi|193670813|gb|FK612795.1|FK612795
EST:     TAACTTCCTAACTTTTGTGAATTCCTCATGACAGAGAGGCGCTCATGACG                         AATTTCTTTTCAGAGCTCCAAGATAGAGAA
genomic: TAACTTCCTAACTTTTGTGA-TTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttc ... tcccaaacagAATTTCTTTTCAGAGCTCCAAGATAGAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACGgtaagctttctttcctcggcattgtccatttcctttaaattaactctaacacagggtttcaatattaactgttgttaaaatactgattgacatggaagca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG