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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGCTTGAGAGAGAATACAATTTGAGCCTAATAACAACTGCTCCAAGTGTTGTGTACAGAGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagctcccttctatttaatactttattttggtgaactattcattaaaactgaatagcctctattttttaaatgtatataaacttgaacgcaatcattttgtctgaatcacaaaatccttgaag

Basic information

species Glycine max
transcript GLYMA06G16700.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 14
GAGAGGCTTGAGAGAGAATACAATTTGAGCCTAATAACAACTGCTCCAAGTGTTGTGTACAGAGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagctcccttctatttaatactttattttggtgaactattcattaaaactgaatagcctctattttttaaatgtatataaacttgaacgcaatcattttgtctgaatcacaaaatccttgaag
|| ||||| ||||| || ||||| || |  || || || || |||||||||||||| || || ||  ||| |||||||||||||||||||||||| |||   ||| || ||      ||||      | |    ||   | |   || ||     ||  |  | |   |  | || |    ||| | ||     | ||||| |||  ||| |                 
GAAAGGCTAGAGAGGGAGTACAACTTAAATCTTATTACCACAGCTCCAAGTGTTGTTTATAGGGTGAACTCTGTAAATGGTGATACTgtaatttcctcttgatcccaaacttttaaatattcttctttgttccctgaaaatcgcatcctt----ttgtctttctttcttgatctagagccttattacct---gtgaaatcaattttactgcag----------------

upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 14
GAGAGGCTTGAGAGAGAATACAATTTGAGCCTAATAACAACTGCTCCAAGTGTTGTGTACAGAGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagctcccttctatt-taatactttattttggtgaactattcattaaaactgaatagcctctattttttaaatgtatataaacttgaacgcaatcattttgtctgaatcacaaaatccttgaag
|| |||||||||||||||||||| |||| | ||||||| ||||||||||||||||| ||||||||  ||||| ||||||||||||||||||| || ||| | |||||| ||| || |  |  |  || |||| |||  ||  |||   |||    |  | ||   |  | |||| | || |   |||   |||                                     
GAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACTgtaatctcctcttaatcctaaactcactgcattcattttattttacttttttggtctaag-attgctgc--actaatattgaattttcatatctgattaa---tga-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208206734|gb|GE002511.1|GE002511
EST:     CAACTGCTCCAAGTGTTGTGTACAGAGTACACTGTGTAAATGGTGATACT                         GTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAAGGAAATC
genomic: CAACTGCTCCAAGTGTTGTGTACAGAGTACACTGTGTAAATGGTGATACTgtaatttctt ... atccttgaagGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAA-GGAAATC