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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGAACAACTAGgtaattattttggatgttgtctatcactgagtcatgttttgctttctttccagaacaaatgatcattacaaaatacttctttctgagtctaaagctctga...

Basic information

species Glycine max
transcript GLYMA06G12320.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12320.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g01860.t01 (Vitis vinifera), 5'ss of exon 16
ACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGAACAACTAGgtaattattttggatgttgtctatcactgagtcatgttttgctttctttccagaacaaatgatcattacaaaatacttctttctgagtctaaagctctga-
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ACTGCTCGTGGAAAGTGGGAAAATGTTCGTGAAGAAGTTGAATACATGTTCAGACAGGGTCGTCCTGTTTTAGTTGGCACCACTAGgtaact-ctatggcagttacttgctaatgtcattcatatttcttcagaatctctctagacttctgtgtgagactattttgatttgtgttatattattacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193609953|gb|FK563515.1|FK563515
EST:     GTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGAACAACTAG                         TGTAGAAAATTCAGAACTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCC
genomic: GTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGAACAACTAGgtaattattt ... ccatatgcagTGTAGAAAATTCAGAACTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCC