Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAGGCCATCAAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTATTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaatatgctatggatgtgtgtatgtttataattttcataaaagttagtttgttagataaatataaaatgacgtagaagagaaatattggaaccg...

Basic information

species Glycine max
transcript GLYMA06G10180.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10180.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 14
TATTAGGCCATCAAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTATTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaatatgctatggatgtgtgtatgtttataattttcataaaagttagtttgttagataaatataaaatgacgtagaagagaaatattggaaccg
|||||||||||||||||||||  |||| ||||||| ||  | ||| ||||| ||||| ||||||||||||||  | ||||||||||| |||||| ||||||| |  || |    | ||  |   |||  | ||||  ||  ||||| ||      | | | || |   | |  |     ||                   
TATTAGGCCATCAAATTTCAAATTACCTGTTGATCCTTTGACTCCAATTATCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAGgttttggattgctttctgatt---tgtgaggttatc-ttagcataagagagtaaatataaaatgagagttactttgtccag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729064|gb|BU762615.1|BU762615
EST:     TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAG                         GAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC
genomic: TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaat ... atttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC
EST: gi|14011836|gb|BG726758.1|BG726758
EST:     TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAG                         GAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC
genomic: TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaat ... atttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC