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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgttagttgatttatttactgttttactttaattgtatacaactttcaagaattttttttgtatatttcgatgggtttgacgtaacttgaccatacatatc...

Basic information

species Glycine max
transcript GLYMA06G07580.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07580.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 5
GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgttagttgatttatttactgttttactttaattgtatacaactttcaagaattttttttgt--atatttcgatgggtttgacgtaact-tgaccatacatatc
 ||||||   || || |||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||| ||| || |  ||     ||||    || || | |     ||    |  ||| |  |||   | |||   |  |  |    |   | |||   | | |   
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCTGCGTCTTGCAACATCTTCATTGGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttg---tagttctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttctttct

upper sequence: GLYMA06G07580.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 15
GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgttagttgatttatttactgttttactttaattgtatacaactttcaagaattttt----tttgtatatttcgatgggtttgacgtaacttgaccatacatatc
 ||||||   || || |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||| ||| || |  ||     ||||    || || | |     ||    |  ||| |    || || | |||  | |  | |   |   ||  |   |   | | 
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttg---tagttctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttctgtct-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208255614|gb|GE055255.1|GE055255
EST:     TTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAAT                         CCTGGTTATTCACTTCGCACCTTCACGGGACATTCAA
genomic: TTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgttagttgat ... tactatgcagCCTGGTTATTCACTTCGCACCTTCACGGGACATTCAA