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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAGgttagtttcccgctgctacatattataatgagcatattacagtcataatgttattaaagtcaatttgaatttttatgtcatcag

Basic information

species Glycine max
transcript GLYMA06G04230.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 8
TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAGgttagtttcccgctgctacatattataatgagcatattacagtcataatgttattaaagtcaatttgaattttt--atgtcatcag
| ||||| || |  |||||||||||||| ||||| |||||||||||||||||   || | |   | ||||         | |    |         | ||   | || | |  ||||   |  |   |||
TAATTAGAAGAGCACCTCATGAATTCAAGATTGCTTGCTTAGAGgttagttttatgcgggt-ttttttatgtctgttgaactctcatgtcctctgaactacgtttaactcggtttttccaaaatatacag

upper sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 10
TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAGgttagtttcccgctgctacatat---------tataatgagcatattacagtcataatgttattaaagt--caatttgaattttta--tgtcatcag---
||||||| || | ||||||||||||||| ||||| ||||| |||||||||| ||  ||  || | ||         ||||   |  |||||     ||   || | |   | |  | |||||   ||||     | ||||    
TTATTAGAAGAGCTCCTCATGAATTCAAGATTGCTTGCTTGGAGgttagttcccaactattagaaatgtatctagatatatctaatatattttcaccactctgatgtagtatttcctatttgttgttttgacccttatcatatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426468|gb|CA937988.1|CA937988
EST:     TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAG                         GACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTT
genomic: TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAGgttagtttcc ... atgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTT