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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGGGATACATGGGGAAGATTCACTGAGAGAATTGCTGCTTATCAGCCTTGGATTTGGACTGCGGGAAATCATGAAATTGATTTTGCTCCACAACTTgtatgtgttacattacataccttattactctactaagttatgtttaagttggactttccttttacctgctatgtgaattgcttcattttcttgaaagggt...

Basic information

species Glycine max
transcript GLYMA06G03100.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 4
AAGGTGGGATACATGGGGAAGATTCACTGAGAGAATTGCTGCTTATCAGCCTTGGATTTGGACTGCGGGAAATCATGAAATTGATTTTGCTCCACAACTTgtatgtgttacattacat---accttattactctactaagttatgtttaagttggactttccttttacctgctatgtgaattgcttcattt-tcttgaaagggt------------------------
 |||||||||||||||| ||||||    ||||| | || ||| || ||||||||||| ||||| || ||||||||||| || |||||||| ||| |||||||| ||||   | | |||   || |||||  | || | |  |    |  |  || |  | |  || |  | |||  | |   |      || | ||  |||  |                        
GAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTgtaagtgtagtactccatttaactttatttgtgtaatgatcttcagtgga--tgcatatacagttcag-tactagataatcagtggagcttatgttataagcatttacattctgttgaacatttgcag

upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G093101_T01 (Zea mays), 5'ss of exon 4
AAGGTGGGATACATGGGGAAGATTCACTGAGAGAATTGCTGCTTATCAGCCTTGGATTTGGACTGCGGGAAATCATGAAATTGATTTTGCTCCACAACTTgtatgtgttacattacataccttat--tactctactaagt---tatgttt---------aagttggactttcctttta---cctgctatgtgaattgc----ttcattttcttgaaagggt------
 || |||||||| |||| ||||||    || || |  | ||| || ||||||||||| |||||||| ||||||||||| || ||||| |||||  |||||||||||  ||   ||| |  | |||  |||     | | |   | ||||          ||  | ||| || |  |     | ||||||| | |||      ||||||   ||| |    |      
GAGATGGGATACTTGGGCAAGATTTGTAGAAAGGAGCGTTGCGTACCAGCCTTGGATCTGGACTGCTGGAAATCATGAGATAGATTTCGCTCCTGAACTTgtatgtagtagtatacttttcatatgctacatggttcaatgggtgtgttggcagttaaaaatatagacatttcactagagccatgctatgagcatttaaatgttcattcagttgcataattttgcag

upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 4
AAGGTGGGATACATGGGGAAGATTCACTGAGAGAATTGCTGCTTATCAGCCTTGGATTTGGACTGCGGGAAATCATGAAATTGATTTTGCTCCACAACTTgtatgtgttacattac--ataccttattactctactaagttatgtttaagttggactttccttttacctgctatgtgaattg----cttcattttcttgaaagggt
 || |||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||  | |||||| |  ||   |  |   | || ||||  |   |    || | |||    ||  ||||    ||    ||| |   |||||    |||  |  | | | |     
CAGATGGGATACATGGGGAAGATTTACAGAGAGAAGTGCTGCTTATCAACCTTGGATTTGGACTGCAGGAAATCACGAAATAGATTTTGCTCCTGATCTTgtaagcattgtgtctcccgttccctattgttaagcagtatt-tcttttttctgtgcttttgacttgaaagcttttctaattgtgaccttggtgctttcgga-----

upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 4
AAGGTGGGATACATGGGGAAGATTCACTGAGAGAATTGCTGCTTATCAGCCTTGGATTTGGACTGCGGGAAATCATGAAATTGATTTTGCTCCACAACTTgtatgtgttacattacataccttattactctactaagttatgtttaagttggactttccttttacctgctatgtgaattgcttcattttc--ttgaaagggt
 || |||||||||||||||||||| |  ||||| | |  ||||||||| ||||||||||||||||  |||||||| |||||||||||||||||  |  ||||| |  |||  |    ||   |   | | ||      |||   |   |    |  |     || || || | ||  ||  |  |||||   |  ||  | |
CAGATGGGATACATGGGGAAGATTTATAGAGAGGAGTTGTGCTTATCAACCTTGGATTTGGACTGTAGGAAATCACGAAATTGATTTTGCTCCTGATATTgtaaggattatgtcttctattct-ccattgtaaggcaatattcatgtatcctgccctatgaatatctcctgt-tgggttaatctattttgcatccaattgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204908|gb|BE331132.1|BE331132
EST:     CTTGGATTTGGACTGCGGGAAATCATGAAATTGATTTTGCTCCACAACTT                         GGTGAAACCAGGCCTTTCAAGCCTTATACTGCTCGTTATCATGTGCCATAC
genomic: CTTGGATTTGGACTGCGGGAAATCATGAAATTGATTTTGCTCCACAACTTgtatgtgtta ... tttactgcagGGTGAAACCAGGCCTTTCAAGCCTTATACTGCTCGTTATCATGTGCCATAC