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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAACTGATGATTTGGGTGAAAACCAGCTTTTTGTTGGTCAAAAGCTCCTTCAAgtaagaaatttcaaattgtatttggatacatgtttctaataacactgaacagatgccacatctgaactgtccactgtttcatttatgttag

Basic information

species Glycine max
transcript GLYMA06G03040.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os10g10500.1 (Oryza sativa), 5'ss of exon 14
GTCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAACTGATGATTTGGGTGAAAACCAGCTTTTTGTTGGTCAAAAGCTCCTTCAAgtaagaaatttcaaattgtatttggatacatgtttctaataacactgaacagatgccacatctgaactgtccactgtttcatttatgttag
 ||| | |||||||| || |||||||||||||| |||||||| ||||||||||||||| | || || ||| |||| |||  ||| || || ||  | || ||  |    |    ||| | |   | || |||||  |  |     |  |   |  ||  ||    |   |   ||   |   ||||     
CTCAAAAGCTGACCTTTACCATGTGATGATATATATGTTCCTGAGTCCAACTGATGATCTTGGGGAGAACGAGCTATTTCCTGGGCAGAAACTAGTGCAGgtttggccataatcattttttgctgctatatgttgattgtgttg-tacatgcacaccgtattctgaacattttcttaatttcttatag---

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 14
GTCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAACTGATGATTTGGGTGAAAACCAGCTTTTTGTTGGTCAAAAGCTCCTTCAAgtaagaaatttcaaattgtatttggatacatgtttctaataacactgaacagatgccac-atctgaactgtccactgtttcatttatgttag
 ||||| ||||| || || ||||| |||||||| |||||||| ||||| ||||||||  | || || || |||||||||||||| || ||  | || || ||  ||  ||||   | | ||    ||  |  ||||    |  ||| ||      ||   ||    |   |   |  | |  |||     ||
TTCACAAGCTGATCTATACCATGTAATGATATATATGTTCCTGAGTCCTACTGATGACCTAGGCGAGAATCAGCTTTTTGTTGGCCAGAAAATGCTACAGgtttgatttttcttgtagcataaaaatgaac-tttcattcattactaaatcttaaccttgattcctagcattttccatgttctttg-accag