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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCACAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgctaattgtactcagaagatcgaccttttataccaataagttatattctgtagaacctttgcaggctatgaacctcataatttaaagaatat...

Basic information

species Glycine max
transcript GLYMA06G00230.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00230.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0585g00030.t01 (Vitis vinifera), 5'ss of exon 14
TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCACAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgctaattgtactcagaagatcgaccttttataccaataagttatatt-ctgtagaacctttgcaggctatgaacctcataatttaaagaatat--
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---------------------GTTAAAAGAGAATCACAAAGGTCGGCAGTTTATTCGTCCAGAAGTATGCAGAACATATAATTTTGGTGAGCATgtacgtgtatctgtc-tgatcagtata--attcttgtttagaaaccaactgtgcagctgtaaatggtttgcctcctttgtgtatcattatgtcatatttgtgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023837|gb|CX710578.1|CX710578
EST:     GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCAT                         GGTTCTAGTTTGGGACAGTTTTTTAAGCAATTTCTTGAGCCAATCAAGCTG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atatttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATTTCTTGAGCCAATCAAGCTG
EST: gi|13479228|gb|BG508571.1|BG508571
EST:     GATAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCAT                         GGTTCTAGTTTGGGACAGTTTTTTAAGCAATTTCTTGAGCCAATCAAGCTG
genomic: GACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagtttgc ... atatttacagGGTTCTAGTTTGGGACAGTTTTTTAAGCAATTTCTTGAGCCAATCAAGCTG