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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcgtttaatgcttttttatgttgcgtatcttgtctaatttacttagcaattgcttttctactag

Basic information

species Glycine max
transcript GLYMA05G37800.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcg----tttaatgcttttttatgttgcgtatcttgtctaatttacttagcaattgcttttctactag------------------------------------------------------------------
 |||  ||||| ||||||  |||||||||| ||||||||||| | |||||||||||| ||||||||||||||||| || || ||||| || || || ||||||   | | |   ||    |||| ||  |    ||  |   || ||| | |   |   ||    |||| | || |||| |                                                                  
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatctttt--ttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcgtttaatgcttttttatgttgcgtatcttgtcta-atttact-tagcaattgcttttctactag--------------------------
||||||||| | ||||||| | ||| |||| ||||||||||| || ||||||||||| ||||| ||||||||||| || || || || ||||| || |||||||| ||  | |  |  ||| |  | || || |    ||| |  |  | |  |||| | |  |||  |  | | || |                          
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatg-atgctctcagcataa-gaatattgatctaatttatgtcattgagaagtactattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcatta-tattcgtttaat----------------gctttttta-----tgttgcgtatcttgtctaatttacttagcaattgcttttctactag
 |||   || |  ||||| |||||| |||| ||||||||||| | ||||||||| || ||||| ||||| ||||| || || ||||| ||||| || |||||||  | || | ||    ||||                ||| |  ||       ||| | || ||||  |||| |||     ||   ||  |   |||
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttactactgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgta-aattgactctcttatcttttaccctttag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcgtttaatgcttttttatgttgcgtatcttgtctaatttact-tagcaattgcttttctactag----------------------
 ||||| || | ||  ||| | ||| |||| ||||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| ||| |||| |||||||| |   |||  |        | |||| |      | | | |  |  |||||  | |    |   |||  | ||                       
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagc-tatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatg-----------cattatattc-gtttaatgcttttttatgttgcgtatcttgtctaatt--tacttagcaattgcttttctactag
||||   || |  || ||  ||||  |||| |||||||||||||  ||||| || || ||||| ||||||||||| || || |||||||| || || |||||| |           ||  |||    ||| |||   |  |  |  ||   || ||   |||||  | | |  || |   |||| | ||||
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaagacggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattag-taattggtgcctgacattgttttttttcctag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgca--------ttatattcgt----ttaatgcttttttatgttgcgtatcttgtctaat--ttacttagcaattgcttttctactag
||||   || |  |||||  ||||  |||| |||||||||||||  ||||| || || ||||| ||||||||||| || || |||||||| || || |||||| |          ||  | |       || |   |  | || |    |     |  ||||   || |||  || |   ||||||  |||
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacgagggcagggcttgaaataacaaagttgaaattgatataagccttgggatattactaactgttgcttgacattgttttttct--tag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattc-gtttaatgcttttttatgttgcgtatcttg----tctaatttactt--------agcaattgcttttctactag----------
 |||   || |||| |||  ||||||||||  |||||||||| |||||||| ||||||||||||||||| || || || || |||||||| |||||||||||| | |  || |   ||||  | |||| |    ||  | ||| ||    || |||||   |        |  ||  |  | || | |            
TTTCTTAGATACTCGACCTATGATTCGATCCATTCTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTATACGATGgtaagaaacatgtctagttttgttctttatatatttatgcatcatgagtctccaatttctctttgccaaaaaaaaaagagtctcgaatttctaaccattt

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcg--tttaatgcttttttatgttgcgtatcttgtctaa-tttacttagcaattgcttttctactag-----
 |||   || |||| |||||| ||||||||  |||||||||| || ||||||||||||||||| |||||||| || || || ||||| || ||||| ||||||      |   | |  |||  |     | |   ||    |     | ||| |||   || || || || || | | |      
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcgtttaatgcttttt---tatgttgcgtatcttgtctaatttacttagcaattgcttttctactag-----
|||    |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| |||||||| |     ||  |||             ||||||    |  ||      | |||||  || |     || |  |       
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S34_101V6.1 (Physcomitrella patens), 5'ss of exon 14
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgta---tgcattata-ttcgtttaat---gcttttttatgttgcg---tatcttgtctaatttacttagcaattgct---tttctactag------------
 ||    ||||| || |||||||| || |||||  | ||||| |  ||||| ||||| ||||||||||| ||||| || || |||||||| ||||| ||||||   | || | || ||| ||| ||   | |     |  | ||    ||  || | | |||  ||   | |||||    ||| | | |             
TTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTATACCATGgtaatgtccactttacttcattttatttagttcagccagatagcaatctaaattatatgattccct--accattgccatatttttgccatgcttaagttgtc

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatat-tcgtttaatgcttttttatgttgc-gtatcttgtctaatttacttagcaattgcttttctactag
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | || |  |  ||     || | ||   |  | |  |||  |                            
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacattatttgcaactatttgctgtacag---------------------------

upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
lower sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcgtttaatgcttttttatgttgcgtatcttgtctaatttacttagcaattgcttttctactag
||||  ||| ||||| |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| || || || |||||||  || | ||   | ||   |    |||| ||||   | ||  ||                             
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacataattatacaacaacattat-ttgcaactatttgctgtacag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208035922|gb|GD836903.1|GD836903
EST:     AAAGACTTATACGATG                         AGTGGACCTGGCCTATCATCAAAATCAGATTGGGGAGTCAACTATCGGGCA
genomic: AAAGACATATACGATGgtatgcatta ... tttctactagAGTGGACCTGGCCTATCATCAAAATCAGATTGGGGAGTCAACTATCGGGCA
EST: gi|207790473|gb|GD760868.1|GD760868
EST:     TTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATG                         AGTGGACCTGGCCTATCATACAAAATTAGATTGGGGAGTCAACTATCGGGC
genomic: TTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcatta ... tttctactagAGTGGACCTGGCCTATCAT-CAAAATCAGATTGGGGAGTCAACTATCGGGC
EST: gi|193312153|gb|FK275629.1|FK275629
EST:     AAAGACATATACGATG                         AGTGGACCTGGCCTATCATCAAAATCAGATTGGGGAGTCAACTATCGGGCA
genomic: AAAGACATATACGATGgtatgcatta ... tttctactagAGTGGACCTGGCCTATCATCAAAATCAGATTGGGGAGTCAACTATCGGGCA