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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGACTTTGGTCTCCTACAATCAAGAATAATATTATCTATGAGGATGGTTCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatttgtgattttgttacttacccaaacttggctctaagatgtttatgctaaactcagtttgaaattttcag

Basic information

species Glycine max
transcript GLYMA05G32070.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345093|gb|CO985826.1|CO985826
EST:     TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|58022119|gb|CX708860.1|CX708860
EST:     TCAGTTCAGAAAATCCCAGAAATACNTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|192296534|gb|FG991640.1|FG991640
EST:     TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|208201785|gb|GE000965.1|GE000965
EST:     CTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: CTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|13791431|gb|BG654022.1|BG654022
EST:     TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|58018661|gb|CX705403.1|CX705403
EST:     TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|58024594|gb|CX711335.1|CX711335
EST:     TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|192293903|gb|FG986112.1|FG986112
EST:     TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGC--AAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
EST: gi|51335204|gb|CO979070.1|CO979070
EST:     TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAA                         GACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG
genomic: TCAGTTCAGAAAATCCCAGAAATACCTGATGATCTGAAAATCATATACAAgtatgagatt ... aaattttcagGACTGTTTGGGAGATTAAGCAAAAGACATTGGTTGATATGGCTGTTGATAG