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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttctcattagcttgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt...

Basic information

species Glycine max
transcript GLYMA05G30000.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 5'ss of exon 14
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttctcattagcttgatagttttgaagggaattaattggtcatga-agatattttgttggattttttattttttattttttatgttcaatt
 | |||||||||||| ||||| |||||||| ||||| ||||| |||||||| |   |  | || || || |||||| | |||||| | ||| | ||||  ||   ||||   || ||| | |||     ||    |||   |   ||   ||||   | |      ||     || |    |  |   |  |         
ATCTGCACAGCTTGTCTTTGCTCCTATTGACGAATCTTTTGCTGATGATGCACCACTTTTACCCTCAGGATTCCGTGTGATACCACTAGATACAAAAATGgt--atgactggtc-cataatctta----ttccagaggccttgtctttcccatgttggctcaccaattaaccgttatgcactcaaacctgcag--------

upper sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G178102_T01 (Zea mays), 5'ss of exon 14
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttctcattagcttgatagttttgaagggaattaattggtcatgaagatattttgttggattttttatttt---ttattttttatgttcaatt----
||||||||||||||| ||||| |||||||||||||| ||||| || ||||| |  || ||||| || || |||||| | |||||  | ||| |||| || || ||| |  | ||  ||  |  |  |   |       |   | |    || |     |   |||    | | |||  |||     | |    |  |  ||||    
GTGTGCACAGCTTGTCTTTGCTCCTATTGATGAATCTTTTGCCGACGATGCACCGTTGCTGCCCTCAGGCTTCCGTGTGATACCGCTTGATGCTAAGACGgtgagt-atttgtcggatctgtatattcactccctcctggtgtcac--atcttacccgtgccttgccacactgtttcctttaacacaatacccaaatgaaattgtag

upper sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G423337_T01 (Zea mays), 5'ss of exon 7
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttctcattagcttgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt
 ||||||||||||||||||||||| || |||||||| ||||| || ||||| |   | || || || || |||||| |||| ||| ||||| | || || ||||||   |       |  ||||| |||| |||       ||  |      | |  || | ||||   | | |  | |                     
ATGTGCACAGCTTGTGTTTGCACCCATCGATGAATCTTTTGCCGACGATGCGCCACTGCTACCCTCAGGCTTCCGTGTCATTCCACTGGATGCAAAGACGgttagtacgacaggctttgtgcttg-tagtattgccttctgttggtctaaactaacaatgtgttgtgtaactatcaactggcag----------------

upper sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 13
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgtt--agtgacatttctcattagc-ttgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt
      ||||||||| ||||| ||||| |||||||||||||| |||||||| |  || || ||||| |||||||| ||||||||  | || |  ||| |   |   || |||| ||  |    | || |  | |  |     ||| | ||  || ||| |  || ||  |  |||| | ||  || | | |  || |      
------ACAGCTTGTATTTGCCCCTATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCCGGTTTCCGCATCATACCTCTTGAACAGAAATCTACTCCGgtaacatgtcaaaaagccatttaaggatcagtcccaaatcatttattcttgacgcaatatt-ctaaatttctaatccttcactgtc-atatag----

upper sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 14
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttctcattagcttgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt----
       |||||||| ||||| || || |||||||||||||| |||||||| |  || || ||||||||||||||| |||||||| | || |  ||||||            ||   | |     | | | || | |  ||  |||| |  ||   || |||      |   ||||  ||||  |  | |||||    ||    
------TCAGCTTGTCTTTGCCCCAATCGATGAATCATTTGCTGATGATGCACCTTTGCTTCCTTCTGGTTTCCGTGTCATACCACTCGACCAAAAAACAAA----------TCCGgtaaaaagaaaactgtttatgataagaaatttgatatcttgaaattgacacagtcctttttcttttattcctgtatgtaacgttacag

upper sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 14
GTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAgttagtgacatttct--cattagct----tgatagttttgaagggaattaattggtcatgaagatattttgttggattttttattttttattttttatgttcaatt
 ||||| ||||| || |||||||||||||||||||||||||| ||||||||||  || ||||| ||||| |||||  |||||||||||||||||||||| ||| ||||   |     ||||   |    | |   ||||| ||  |||   ||  |      || | |   |      |  | ||    | |||||  | |     
CTGTGCTCAGCTGGTTTTTGCACCTATTGATGAATCATTTGCTGATGATGCTCCTTTGCTGCCATCTGGCTTCCGCGTCATACCATTGGATCCTAAAACGgtttgtgaagctctatacattgaatgctattaccattttggagaaaat--gttattttcagtgagaatcaatgaagcatggtgttccacagtttttgggata----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317304|gb|FK010535.1|FK010535
EST:     TCTCTTACTGCCTTCTGGTTTCCCGTATCATACCATTGGATCCTAAAACA                         GATGGTTTGGCTTCAACTAGGACATTGGATTTAGCATCAACACTGGAAACA
genomic: TCTCTTACTGCCTTCTGGTTT-CCGTATCATACCATTGGATCCTAAAACAgttagtgaca ... tgcattgcagGATGGTTTGGCTTCAACTAGGACATTGGACTTAGCATCAACACTGGAAACA