1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTCTACATCAACAGATGCCATGGATGTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaactgtcaattcctatatcgcagttttgttttcttatattcctgtctctgctctacctgtttcagacgtaaaatatctttctattgacttgcag
species | Glycine max |
transcript | GLYMA05G25980.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTEST: gi|208059101|gb|GD856151.1|GD856151
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG AATTGAAGAATTTAATTCTCTAEST: gi|207828744|gb|GD800869.1|GD800869
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTA
EST: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAEST: gi|208236812|gb|GE029290.1|GE029290
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCA
EST: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTACATCAACAGATGCCATGGATGTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaactgtcaattcctatatcgcagttttgttttcttatattcctgtctctgctctacctgtttcagacgtaaaatatctttctattgacttgcag
- - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT