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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCAATGGAGgtatgaagtttctctaatgcatttaatatgggaaagaagttttttcttttgcactacatttccttgcgttatgcagcaatgctactagagcaaaagagtg...

Basic information

species Glycine max
transcript GLYMA05G25210.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25210.1 (Glycine max), 5'ss of exon 14
lower sequence: AT4G15570.1 (Arabidopsis thaliana), 5'ss of exon 11
GAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCAATGGAGgtatgaagtttctctaatgcatt----taatatgggaaagaagttttt--tcttttgcactacatttccttgcgttatgcagcaatgctactagagcaaaagagtg
|| |   | | | | | ||| |||||  |  || | || || || || || |||||||||||||| |||||||||||||||||| || || | | |   ||||||  |||  || ||| ||||     | |||  ||||   | |  |  |||| |    ||   || || ||  | | |||                        
GAGGTGGTTAATGCGAGTCGGAAGTACAGATTACGTGTACTTGTCTGTGCTCCATCAAACTCTGCACTTGATGAGATTGTGTTGCGGCTTCTGAGTTCGGgtatgtggttaatccaattcattatttcattatttgaaaattggtaatggtcttatatgttatggtttct-gcactct-cag------------------------

upper sequence: GLYMA05G25210.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv19s0015g00460.t01 (Vitis vinifera), 5'ss of exon 10
GAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCAATGGAGgtatgaagtttctctaatgcatttaatatgggaaagaagttttttcttttgcactacatttc-cttgcgttatgcagcaatgctactagag-caaaagagtg
|||    | ||||| | |||||| ||||||||| | || || ||||| || |||||||| ||||| |||||||||||||||||| |  || | |||   ||||  |||| ||| |  |     |  |||          |  ||||| ||||  |   | || | || ||   |  ||| |     |     || |  | | 
GAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAAATACTGgtac-aagtatctatgctatgcatgttatcattccccc-tcgtttctcttgcttttgttatcacctgtgtctggatgcattttggttttcctcatataaatt