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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAAAAACAGTCAACTATCAGTTGTATTGGATGCTGTGGAAAGAATGCATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttttataactcaaattgtcaatttctactcagttctcgatttatcatgactcctatacattttcttgttgcccattttggttataaaatcatt...

Basic information

species Glycine max
transcript GLYMA05G01300.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259159|gb|BG882067.1|BG882067
EST:     ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|9898827|gb|BE607795.1|BE607795
EST:     ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|8826963|gb|BE210693.1|BE210693
EST:     ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGGTGGCAATTCAGTGAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|19346874|gb|BM891762.1|BM891762
EST:     ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|27427456|gb|CA938976.1|CA938976
EST:     ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|17020750|gb|BM091784.1|BM091784
EST:     TGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: TGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|8827894|gb|BE211624.1|BE211624
EST:     TAACCATTTAACGGGTGCTGTAGGTTCAAATGATTCCTTTGTTTT-ACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTTGTCTTAGAGCA
genomic: TAACCATTTAACGGCTGCTGTAGTTTCAAATGAT-CCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|7926202|gb|AW832228.1|AW832228
EST:     ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: gi|15203001|gb|BI425769.1|BI425769
EST:     ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG                         GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAAAAACAGTCAACTATCAGTTGTATTGGATGCTGTGGAAAGAATGCATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttttataactcaaattgtcaatttctactcagttctcgatttatcatgactcctatacattttcttgttgcccattttggttataaaatcatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT