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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagttccctttctatgtaatactttattttgctgaactattcattaaaactgatttgcctctattttttaaatatatatcatattaatgcaatcattttgtctgaatcacaaaatccttgaag

Basic information

species Glycine max
transcript GLYMA04G38360.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 14
GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagttccctttctatgtaatactttattttgctgaactattcattaaaactgatttgcctctattttttaaatatatatcatatta---atgcaatcattttgtctgaatcacaaaatccttgaag
|| || || ||||| || ||||| || |  || || || || ||||||||||| || || |||||  ||| |||||||||||||||||||||||| |||   ||| ||  |   |||  || |  | |||| ||   |||||      | |   |    |||| || | ||| || |        | |||||    || ||||| |||  ||| |                 
GAAAGGCTAGAGAGGGAGTACAACTTAAATCTTATTACCACAGCTCCAAGTGTTGTTTATAGGGTGAACTCTGTAAATGGTGATACTgtaatttcctcttgatcccaaact---tttaaatattcttctttgttcc-ctgaa------aatcgcatccttttgtctttctttcttgatctagagccttattacctgtgaaatcaattttactgcag----------------

upper sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 14
GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagttccctttctatgtaatactttattttgctgaactattcattaaaactgatttgcctctattttttaaatatatatcatattaatgcaatcattttgtctgaatcacaaaatccttgaag
|| || ||||||||||||||||| |||| | | ||||| |||||||||||||| || ||||| ||  ||||| ||||||||||||||||||| || ||| | ||||||  || ||   |   |  || |||| |||  ||  |||       | | ||   |||    || ||  |  |  |||||  |||||||                                  
GAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACTgtaatctcctcttaatcctaaactcactgcattcattttattttacttttttggtcta-------agattg--ctgcactaatattgaattttcatatctgattaatga---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814694|gb|BI786969.1|BI786969
EST:     CAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAA---TG-----                         GTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCA
genomic: CAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTgtaatttctt ... atccttgaagGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCA