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TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtagatttgtcctgcaggtctggggtcctgaagggaggtctttttcctttcctttttttaatcttgaaagagggtatagattcatttgtagatat...
species | Glycine max |
transcript | GLYMA04G37370.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTTATAATGTGAAAGGTEST: gi|192327947|gb|FK022478.1|FK022478
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|26269205|gb|CA820268.1|CA820268
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|21995020|gb|BQ786548.1|BQ786548
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|20812907|gb|BQ297385.1|BQ297385
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|21678465|gb|BQ630816.1|BQ630816
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|51341763|gb|CO983080.1|CO983080
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|33390686|gb|CA853881.1|CA853881
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|5678159|gb|AI939289.1|AI939289
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtagatttgtcctgcaggtctggggtcctgaagggaggtctttttcctttcctttttttaatcttgaaagagggtatagattcatttgtagatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG