Sequence
atgc intronic sequence ATGC exonic sequenceAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGgtctgttattattaaatactcaaccatactttacgatccaaagtgacacggtggctgcatgctacactaatattttacttcagtctcttaactcgttcttttatctgttattattttcatttgcttagataaaggatttattcatgtag
Basic information
species | Glycine max |
transcript | GLYMA04G21450.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G21450.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 13
AACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGgtctgttattattaaatactcaaccatactttacgatccaaagtgacacggtggctgcatgctacactaatattttacttcagtctcttaactcgttcttttatctgt-tattattttcatttgcttagataaaggatttattcatgtag
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AACTGACTTGGGGTTGATATCACAATGTTGCTTAACCAAACATGTTTTCAAGATCAGCAAGCAGTACCTGGCAAATGTCTCACTTAAAATCAATGTTAAGgt--------accaaatactta--taaaccaagcagt------taatacttagcttgtctac-acaaatgtagtgtaatgcagtaagcagacttgcagcattgctaatgccttgcatttcggagttgtgatacag---------------
upper sequence: GLYMA04G21450.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 13
AACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGgtctgttattattaaatactcaaccat-actttacgatccaaagtgacacggtggctgcatgctacactaatattttacttcagtctcttaactcgttcttttatctgttattattttcatttgcttagataaaggatttattcatgtag
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CACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTACTAAAAATGTCTACAAGATTAGCAACCAGTACCTGGCAAACGTGTCACTTAAAATCAATGTTAAGgtctgtccagactgaaacttctgtggcgattctactacttaaaaata---gattgcttattgcaaagttaatgtttcctctaagcttggtttcgggatttttctttttccccag------------------------------------
upper sequence: GLYMA04G21450.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S173_134V6.1 (Physcomitrella patens), 5'ss of exon 12
AACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGgtctgttattattaaatactcaaccatactttacgatccaaagtgacacggtggctgcatgctacactaatattttacttcagtct--cttaactcgttcttttatctgttatt-attttcattt--gcttagataaaggatttattcatgtag---------------------
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GACTGTCCTGGGGGTCGTGTCTCAATGTTGTTTGACGAAACATGTATTTAAGATGAGCAAACAGTACTTGGCAAATGTTGCCCTGAAAATCAATGTCAAGgtca--tgctcttgaatactt--ccatttctcctgatatggcttgattgatctcaagaatgttctagaaagagtttcctaggagctgatttaaaactgttcaaaacttggaatagatgattgttcaagtgcagatgactatttctttttctttacgttcactctgtatttgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193546864|gb|FK501389.1|FK501389EST: AGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAG ATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCA
genomic: AGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGgtctgttatt ... attcatgtagATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCACTAAAAATCAATGTCAAGgtctgttattattaaatactcaaccatactttacgatccaaagtgacacggtggctgcatgctacactaatattttacttcagtctcttaactcgttcttttatctgttattattttcatttgcttagataaaggatttattcatgtag
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