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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAGGCCATCGAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTATTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaatatgttatagatgtttgtatgtttaaaattgtcatgaaagttagtttgttagataacaactatatagaataaagataggatggtggttgaa...

Basic information

species Glycine max
transcript GLYMA04G10200.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10200.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 14
TATTAGGCCATCGAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTATTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaatatgttatagatgtttgtatgtttaaaattgtcatgaaagttagtttgttagataacaactatatagaataaagataggatggtggttgaa
|||||||||||| ||||||||  |||| ||||||| ||  | ||| ||||| ||||| ||||||||||||||  | ||||||||||| |||||| ||||||| |  || |   || |     |||||  | |||   ||  ||| | ||      | | | || | |  ||  | |   |                    
TATTAGGCCATCAAATTTCAAATTACCTGTTGATCCTTTGACTCCAATTATCATGGTGGGACCTGGTACTGGCTTGGCACCTTTCAGAGGATTTCTACAGgttttggattgctttctg---atttgtgaggttatc-ttagcataagagagtaaatataaaatgagagttactttgtccag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296494|gb|FG989110.1|FG989110
EST:     TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAG                         GAAAGATTTGCGCTCAAAGAGGATGGTGTTCAACTTGGCCCTGCAATACTC
genomic: TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaat ... atttacccagGAAAGATTTGCGCTCAAAGAGGATGGTGTTCAACTTGGCCCTGCAATACTC