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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgtaagttgatttatttactgttttactttaattgtatacaaatttcaggaaactgttttgtatattttaacgggtttgatgtaacttgaccatacacatc...

Basic information

species Glycine max
transcript GLYMA04G07460.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07460.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 5
GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgtaagttgatttatttactgttttactttaattgtatacaaatttcaggaaactgttttgtatattttaacgggtttgatgtaacttgaccatacacatc--
 ||||||   || || |||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||| ||| || |  ||     ||||    |   ||| |      ||  |    ||  | |   | ||||     |  | || |  |||    ||   | |   
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCTGCGTCTTGCAACATCTTCATTGGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttgtagtt-ctgtgtgttttctttggttttctaatgttagtgtttttgtaagaat-attttgcttctgaatgttctttct

upper sequence: GLYMA04G07460.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 15
GCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgtaagttgatttatttactgttttactttaattgtatacaaatttcaggaaactgttttgtatattttaacgggtttgatgtaact-tgaccatacacatc-
 ||||||   || || |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||| ||| || |  ||     ||||    |   ||| |      ||  |    ||  | |   | ||||     |  |  | |   | |||   | |   || 
ACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTCTTGCAACATCTTCATTTGACAAAACCGTCAGGGTTTGGGATGCTGACAGTgtcagtggactagttcttctttttgtagtt-ctgtgtgttttctttggttttctaatgttagtgtttttgtaagaatattttgcttctgaatgttc-tgtct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193386393|gb|FK349487.1|FK349487
EST:     TTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAAT                         CCTGGTTATTCACTTCGTACTTTCACGGGACATTCAACATCTGTTATGTCA
genomic: TTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgtaagttgat ... tactatgcagCCTGGTTATTCACTTCGTACTTTCACGGGACATTCAACATCTGTTATGTCA
EST: gi|207684382|gb|GD665629.1|GD665629
EST:     TTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAAT                         CCTGGTTATTCACTTCGTACTTTCACGGGACATTCAACATCTGTTATGTCA
genomic: TTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATgtaagttgat ... tactatgcagCCTGGTTATTCACTTCGTACTTTCACGGGACATTCAACATCTGTTATGTCA