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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACGGATGAAATCAGCTACCTTAAGGTTGGAATTCCCCTAGGAAAAATTTTCATTATTAATCCCAGGgtaaataaatccttcttttttaaaagtaaaaatttgcttcatgctagaagttcctaaaatgtttgaagttcgtcaaacctttcttatttttaagttcgcag

Basic information

species Glycine max
transcript GLYMA04G04060.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os11g40080.1 (Oryza sativa), 5'ss of exon 8
CAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACGGATGAAATCAGCTACCTTAAGGTTGGAATTCCCCTAGGAAAAATTTTCATTATTAATCCCAGGgtaaataaatccttcttttttaaaagtaaaaatttgcttcatgcta-gaagttcctaaa-----atgtttgaagttcgtcaaacctttct-tatttttaagttcgcag----------------------------
 | ||||||||||||||| ||||| ||||| ||||| |||||  | || ||||| |||||||| |||||  | || |||||||| ||||| ||||||| |||||   |     ||  ||  | |  |      || || ||| | |  ||||| ||  |     ||  ||| |    | | | ||  |    || ||  || | |||                             
AAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGgtaacaga-----tcacttagacagatggtcccttcctacatccaacaaagtttctctatctgcataattggatcaggcccagccagtgaacatattggagatggcatttagaaaatgtgtgtaaattttgtgcag

upper sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 14
lower sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 9
CAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACGGATGAAATCAGCTACCTTAAGGTTGGAATTCCCCTAGGAAAAATTTTCATTATTAATCCCAGGgtaaataaatccttcttttttaaaagtaaaaatttgcttcatgctagaagttcctaaaatgtttgaagttcgtcaaacctttcttatttttaagttcgcag----------
||  |||||||||||||||||||| || || || || ||||| || ||||||||||| || ||||| |||| |||||| || ||||||||||| || | |||| | |         || |||||| | |||||   | | |   || ||       || |      | || ||  |||      |  | | | | |   ||          
CAACCCATTCTATGCTGGTTTTGGAAACAGAGACACAGATGAGATAAGCTACCTTAAAGTCGGAATCCCCCGAGGAAAGATCTTCATTATTAACCCAAAGgtacaca---------ttcttaaaattgaaaatc--cattagcataaaaagagacgaattagcaacattttgtggaacaaactatgctctcaggcttaaaggactcaactg

upper sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 11
CAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACGGATGAAATCAGCTACCTTAAGGTTGGAATTCCCCTAGGAAAAATTTTCATTATTAATCCCAGGgtaaataaatccttcttttttaaaagtaaaaatttgcttcatgctagaagttcctaaaatgtttgaagttcgtcaaacctttcttatttttaagttcgcag
|| ||||||||||||||||||||| ||  |||| || |||||  | |||||||||||||||||||||||   ||| ||||| ||||| |||||||| | |||||         |  | |  |   |||| |     ||   |||       |  || ||| | ||||          | | |     |||| |||  ||||
CAATCCATTCTATGCTGGTTTTGGAAACCGGGACACTGATGAGTTTAGCTACCTTAAGGTTGGAATTCCAAAAGGCAAAATATTCATCATTAATCCTAAGgtaacctgcagacttctatacaggtgtaacagaaaactatgtgc-----actggtataatttgtgaaaacttct---cttctgaccattttgagtctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258782|gb|BE346929.1|BE346929
EST:     ACCTTAAGGTTGGAATTCCCCTAGGAAAAATTTTCATTATTAATCCCAGG                         GGAGAGGTGGTTATAAACCGCCGTGTTGACGCAAAATCATATACTTCTCTG
genomic: ACCTTAAGGTTGGAATTCCCCTAGGAAAAATTTTCATTATTAATCCCAGGgtaaataaat ... aagttcgcagGGAGAGGTGGTTATAAACCGCCGTGTTGACGCAAAATCATATACTTCTCTG