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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAACCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCAAAAACAACATAAATATCTGgtaatagcaaaaaacaacttcagtttaatgaacgtggtgtatggtgtatggtgttcattaattggttttccgatgaggcctcag

Basic information

species Glycine max
transcript GLYMA04G03010.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAACCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCAAAAACAACATAAATATCTGgtaa------tagcaaaaaacaacttcagtttaatg-aacgtggtg-tatggtgtatggtgttcattaattggttttccgatgaggcctcag-------------
||||||||||||||||||| || || ||  | || ||||||||||||||  | || |||||||||||||| |||| |||||  ||||   | ||| | ||||||      |  |        | | |  ||| ||| |||    |  | ||   |  | |  | |  |  |  || ||   ||  ||   |              
AGATGAAGATGTCAATTCTTCTTGGAGTTGCACAAATGAACCTTGGAATTGTGATTAGTTACTTTAATGCGAAATTCTTCAGGAACAGTGTTAATGTGTGgtaagtttattgtctcgtgttgaatgcccttttatgtaacactctactttgagatgagattatgaccagattattctctattgctgctgtatgcttttgtaacag

upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os10g10500.1 (Oryza sativa), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAACCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCAAAAACAACATAAATATCTGgtaatagcaaaaaacaacttcagttta----atgaacgtggtgtatggtgt----atggtgttcattaattggttttccgatgaggcctcag---------------------------------------------------------
|||||||| |||| |||||  | || ||  | || |||||||||||||| || |||||||||||||| ||||| |  |||| |||    || ||| | ||||||  | || || |  ||   |  ||    ||||  | | ||||||        ||    |    ||  || | ||    |    |                                                              
AGATGAAGCTGTCTATTCTTATTGGAGTTGCACAAATGAACCTTGGAATAATGATGAGTTACTTTAACGCAAAGTTTTTCAGAAATGCTATTAATGTTTGgtaa--gtaagaatcttctatggaatatgccatgattgagttgtatgacaataagattacatatgatacatgatatttttttagaactattatattgttttacttaaaacagtaggccattctcattcagttgtgtaactatgtaacag

upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 14
lower sequence: AT2G21410.1 (Arabidopsis thaliana), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAACCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCAAAAACAACATAAATATCTGgtaatag--caaaaaacaacttcagtt-taatgaacgtggtgtatggtgtatggtgttcattaattggttttccgatgaggcctcag
||||||| |||||||||||  | || ||  | || |||||||| |||||||||||||| | |||||||||||||| ||||||||      |||| || |||| |     |||    |  |    ||  | | | || |     |     |    | |       |   |  ||  |   ||   |||
AGATGAAAATGTCAATTCTTATTGGAGTTGCACAAATGAACCTCGGAATCATAATGAGCTTCTTTAATGCAAAATTCTTCAAAAGTGCTGTAAACATATGgtgagtattcaattttctgcccttgtcattacgtacttctcccagttcttcaattatctgcccttgtctgatctcacatggttccag

upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 14
lower sequence: AT4G39080.1 (Arabidopsis thaliana), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAACCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCAAAAACAACATAAATATCTGgtaatagcaaaaaacaacttcagtttaatgaacgtggtgtatggtgtatggtgttcattaattggttt---tccgatgaggcctcag-----------------------
||||||| |||||||| || || || || || || |||||||| |||||||||||||| ||||||||||| | || |||||||   |   ||||||| ||||     ||    | |  ||| |   |   | |||| | | |  | | |   |||| ||||   ||     || |       |||||                       
AGATGAAAATGTCAATCCTTCTCGGAGTTTCTCAAATGAACCTCGGAATCATAATGAGCTACTTTAATGCTAGATTCTTCAAATCAAGTGTAAATATATGgtgggttcagttgatattttctgacca--tagcgtgctctctc-tctctccagttccttaaacagtaaaaatcagtcatcatctcagcatctaattttgcgggcttgcag

upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 13
AGATGAAGATGTCAATTCTGCTGGGGGTATCCCAGATGAACCTTGGAATCATAATGAGTTACTTTAATGCAAAATACTTCAAAAACAACATAAATATCTGgtaatagcaaaaaa-caacttcagtttaatgaacgtggtgtatggtgtatggtgttcattaattggttttccgatgaggcctcag---------------
|||||||||||||||| || || || ||| |||||||||| |||||||||||| |  | || || ||||| | || |||   ||| ||| ||||||| |||| |   | |     |||||  | | |    | | |     || | | |   | |  | |  | |  |    ||  |    |                  
AGATGAAGATGTCAATCCTACTTGGAGTAGCCCAGATGAATCTTGGAATCATATTAGGCTATTTCAATGCGACATTCTTTGGAAATAACCTAAATATTTGgtgagctctatgggtcaactgaattcttgcaagcattcaccatagagcaccttttataattgtagaatggttgacaaacatttgactgattcttacgata