Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGTGCTCCCCCAAGTGGTCCCCCATCAACTGCAGATGCATATGAGAGGATGCTTTCAACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGgttctttcacttgattctgctccgacaattctatattttatgtagttcttttctatatctaaaatgtatttttttttaccag

Basic information

species Glycine max
transcript GLYMA04G01470.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01470.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 14
TTTGGGTGCTCCCCCAAGTGGTCCCCCATCAACTGCAGATGCATATGAGAGGATGCTTTCAACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGgttctttcacttgattctgctccgacaattctatat---tttatgtagttcttttctatatctaaaatgtatttttttttaccag----------
|||||||||||| |||||||| ||| |||| || |  |||||||| ||||   |||||||  | |||||||| | ||||| |||||| |||| ||||||||| |  |   ||  |||   | ||     |  | ||    | || |      || ||| ||  | ||  |||| ||||||               
TTTGGGTGCTCCTCCAAGTGGCCCCACATCCACCGTTGATGCATACGAGAAACTGCTTTCCTCTATTCCAGAATATGCAAGCTTTGGAAAGCCTTTCAAGgtcccctgctttttttcacatacgcttcatgcacatggactaatttgaaatgttacta-attcagaagttattcttttttcgttttatttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236799|gb|BE805687.1|BE805687
EST:     GGATGCTTTCAACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAG                         TCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAAT
genomic: GGATGCTTTCAACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGgttctttcac ... tttttaccagTCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAAT